PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G10300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 590aa MW: 63366.8 Da PI: 6.5512 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.5e-11 | 175 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g ONIVA11G10300.1 175 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 231 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 51.1 | 3.3e-16 | 274 | 325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g ONIVA11G10300.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 325 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-8 | 175 | 231 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-18 | 175 | 241 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-14 | 175 | 241 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-23 | 176 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-11 | 176 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.122 | 176 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 177 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 274 | 325 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.54E-24 | 274 | 335 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 274 | 335 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.834 | 275 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-33 | 275 | 339 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 275 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MASITNWLGF SSSSFSGAGA DPVLPHPPLQ GKTSHLMHQW GSAYEGGGTV AAAGGEETAV 60 PKLEDFLGMQ VQQETAAAAA GHGRGGSSSV VGLSMIKNWL RSQPPPAVVG GEDAMMALAV 120 STSASPPVDA TAPACISPDG MGSKAADGGG AAEAAAAAAA QRMKAAMDTF GQRTSIYRGV 180 TKHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPV 240 SNYEKELDEM KHMNRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 300 LYLGTFGTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SIIESSNLPI GTGTTRRLKD 360 SSDHTDNVMD INVNTEPNNV VSSHFTNGVG NYGSQHYGYN GWSPISMQPI PSQYANGQPR 420 AWLKQEQDSS VVTAAQNLHN LHHFSSLGYT HNFFQQSDVP DVTGFVDAPS RSSDSYSFRY 480 NGTNGFHGLP GGISYAMPVA TAVDQGQGIH GYGEDGVAGI DTTHDLYGSR NVYYLSEGSL 540 VANVEKEGDY GQSVGGNSWV LPTPESEMVE KADNVTVCHG MPLFSVWNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287621 | 0.0 | AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876947.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-124 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A0E0J100 | 0.0 | A0A0E0J100_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G10300.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-116 | AP2 family protein |