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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G08160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21377 Da PI: 4.5634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 3e-18 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr+p gk++r++lg+f ++e+Aa a++ a+++l+g ONIVA11G08160.1 17 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 66 69****999.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-22 | 17 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-36 | 17 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 17 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.48E-29 | 17 | 75 | No hit | No description |
PRINTS | PR00367 | 2.6E-12 | 18 | 29 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-12 | 18 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-12 | 56 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEVVVMQNGG GGEMAGQYRG VRKRKWGKWV SEIREPGKKT RIWLGSFESP EMAAVAHDVA 60 ALRLRGRDAR LNFPAIAHRF RRPDTAEPGD VRAAALEAAA QVRFTPDLLV VAGGDDAGRR 120 CCSAGEAEAA AVAAAAWEWD VVVGGGGDEL EAKSPNMWAE LAEAMLMAPP VWEGGGETDN 180 DEWAQQAASL WDPSVWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 17 | 74 | 5 | 63 | ATERF1 |
3gcc_A | 2e-16 | 17 | 74 | 5 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119671 | 0.0 | AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence. | |||
GenBank | AC135460 | 0.0 | AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616190.2 | 1e-115 | ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A0E0J057 | 1e-137 | A0A0E0J057_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G08160.1 | 1e-138 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 5e-26 | ERF family protein |