PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G02640.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 562aa    MW: 61576.4 Da    PI: 5.1279
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G02640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.37.4e-1011735541373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  ++
  ONIVA11G02640.1 173 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLEHRLLASAEERASAMELLEAYQVFMAACCFKWVA 265
                      689***************************************************9.88999999999999999********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN aIl+a+eg ++vHi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a r
  ONIVA11G02640.1 266 FTFANMAILRAAEGRSKVHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAAAR 359
                      ***********************86538*************************************************************9999* PP

             GRAS 186 ledleleeL...rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      +e+++ e+     v+p +Ea++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l+a
  ONIVA11G02640.1 360 WETVTAEDVgggGVDPdEEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLDA 453
                      *********8777999999*****************98877779************************************************99 PP

             GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                      + p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r 
  ONIVA11G02640.1 454 TTPEEGsHLRAVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEGDVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGRI 547
                      988876599****************************************************************999****************** PP

             GRAS 367 LvsvSaW 373
                      L++ SaW
  ONIVA11G02640.1 548 LYAHSAW 554
                      ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.314147535IPR005202Transcription factor GRAS
PfamPF035142.6E-98173554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED IDDDMFFCLY PDHPALLEAQ QPFAQILSSS  60
SGIAGEVNSA PMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATLEEEDDDD  120
DGIGEMLEKM MLNGDEDEAF HGETNAPRVP AEKKGGKPAP RRRRQGKGEV VDLRELLMSC  180
AQAVASGNRR SAGELLEQIK RHSSPTGDAT ERLAHYFADG LEARLAGAAS LEHRLLASAE  240
ERASAMELLE AYQVFMAACC FKWVAFTFAN MAILRAAEGR SKVHIVDYGG QYHGLQWPSL  300
LQRLAEREGG PPEVRMTLVG HPQPGFRPAR RLERTGRRLS NCARAFGLPF KFRAVAAARW  360
ETVTAEDVGG GGVDPDEEAV VVNDVLSLGT LMDESGVFDD PSPRDTVLGS IRDMRPAVFV  420
QAVVNGAHGA PFFPTRFREA LFFFSALFDM LDATTPEEGS HLRAVLERDV LRRAAVGVIA  480
GEGAERVERP ETYRRWQARN RRAGLRQVAV EGDVVEAVRR RVRRRHHEEF VIEEDAGWLL  540
QGWKGRILYA HSAWVVAEDG AH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3818055526379Protein SCARECROW
5b3h_A3e-3818055525378Protein SCARECROW
5b3h_D3e-3818055525378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0E0IY250.0A0A0E0IY25_ORYNI; Uncharacterized protein
STRINGONIVA11G02640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-92SCARECROW-like 14