PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ONIVA11G01720.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 99aa MW: 11464.9 Da PI: 4.8998

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G01720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.1e-10	14	38	1	25
TSSS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWk 25 +g+WT+eEd +lv +++++G+g+W+ ONIVA11G01720.1 14 KGPWTPEEDIILVSYIQEHGPGNWR 38 79**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-12	5	39	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.097	9	38	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.58E-8	9	39	IPR009057	Homeodomain-like
Pfam	PF00249	3.9E-8	14	39	IPR001005	SANT/Myb domain
CDD	cd00167	6.26E-6	16	39	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSP QIRQALDQRG EPDQAYELIE 60 HFEIEKIEHA MNDHSASPQA PLFRVWERIK LQAPIFFGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC123525	4e-58	AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBank	AK241549	4e-58	AK241549.1 Oryza sativa Japonica Group cDNA, clone: J065176M15, full insert sequence.
GenBank	AP014967	4e-58	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	4e-58	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0IXN6	2e-67	A0A0E0IXN6_ORYNI; Uncharacterized protein
STRING	ONIVA11G01720.1	3e-68	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	4e-24	myb domain protein 94