PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G21500.4
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 711aa    MW: 78763.8 Da    PI: 5.9554
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G21500.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.48.4e-592583781121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  ONIVA10G21500.4 258 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 350
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  ONIVA10G21500.4 351 RYPFLEAYSKPIRCISRNRTSRPLGSAK 378
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.45E-741178IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555503.98E-5628697IPR000980SH2 domain
PROSITE profilePS500019.366635711IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MASSGLRRRG ERESGTKPSP PPTSRSAAAR PPMAAPPGRG GADGYCDLPD VRLELDPGKV  60
RGGGGGFTVC FWLYLSSSAR PSSVILHQVA EGGGDKVPFL ALGEGNKLIL FPFLGFHREA  120
PTPDSSYPWT DITNLTEVNE CPLDNWFHVG CEVTENIMRL HIDGDLVAET HLHSLYNEPD  180
YQDDANQINL LGSEDKLEGY VYNMELSCML GNIQQQFAKN PPFKLSIDYS CSDGIEEGDD  240
GIWNIVGGKA SCRRNFILEV ILVDAFGEAA KDREIVASLV YADNGALVEK SRDDSEPPLL  300
ISCDGIEYPA VSRPLPIIRG RALFKLKISQ LSSKCDNKLF RIFFSTLGMK RYPFLEAYSK  360
PIRCISRNRT SRPLGSAKRI GSASMDDIKS INNCEGFGHS GKANGRLQTH DPSSVVCFHP  420
SKFSKIEDDV QKTSSQNKHA KKMVLDKGAQ DVMVSDSTAS DYDSMDAGSS WSLSDGDDVE  480
SFSDAEIFRY CLDGTHERSK FLRAAAPSVN EDDLIKLANQ VSLYSGCTHH RNQILISKQL  540
LQEGADIWSI ISKNNERALW SSAVPEMKAK FLEIVHPSNR GLSEQDFEVL RGIAGCGDDI  600
GRDEFDKLWS WLYPVAIALS KDKINRLWDF TAHRWIEGLI TLQETENALR SSRDRLMKPG  660
TFVLRFPTTR SWPHPDAGSL VVTYVGSDNS IHHRLLSLDV RVDRLPSSMQ S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0E0IWN40.0A0A0E0IWN4_ORYNI; Uncharacterized protein
STRINGORUFI10G20190.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-144SH2 domain protein B