PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G10210.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 318aa    MW: 34606.7 Da    PI: 5.5804
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G10210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.8e-082602932154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  ONIVA10G10210.1 260 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 293
                      569*****************************87 PP
2ELK26.81.2e-09214235122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  ONIVA10G10210.1 214 ELKHELKQGYKEKLIDIREEIL 235
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-205094IPR005540KNOX1
PfamPF037905.6E-185293IPR005540KNOX1
SMARTSM012565.5E-27103159IPR005541KNOX2
PfamPF037911.1E-18111158IPR005541KNOX2
SMARTSM011880.004214235IPR005539ELK domain
PROSITE profilePS5121310.039214234IPR005539ELK domain
PROSITE profilePS5007111.742234297IPR001356Homeobox domain
SuperFamilySSF466893.21E-16236301IPR009057Homeodomain-like
SMARTSM003894.8E-11236301IPR001356Homeobox domain
CDDcd000861.41E-11237298No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25241298IPR009057Homeodomain-like
PfamPF059208.6E-18254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAFHGHLPHE MTMQALGADD AAVAAAAAAG GGGEDAVAAA MGGGGEADAA RCKAEILAHP  60
LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQGVVAKYS ALAAAAAGDD GRELDQFMTH  120
YVLLLCSFKE QLQQHVRVHA MEAVMACWEL EQNLQSLTGA SPGEGTGATM SDGEDDQADS  180
EANMYDPSLD GADNMGFGLP TESERSLMER VRQELKHELK QGYKEKLIDI REEILRKRRA  240
GKLPGDTTST LKAWWQSHAK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS  300
SSTSVKTKRK SNAGDNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13237301872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345860.0CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573667.30.0homeobox protein knotted-1-like 13 isoform X2
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0ISF20.0A0A0E0ISF2_ORYNI; Uncharacterized protein
STRINGOPUNC08G08730.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-158KNOTTED1-like homeobox gene 3