PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G10170.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 736aa    MW: 80957.5 Da    PI: 7.812
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G10170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1963118257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk
  ONIVA10G10170.1  63 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 118
                      6677899************************************************8 PP
2START73.55.7e-242684986201
                      HHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
            START   6 aaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                      ++++l+ k +++ p+W         es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ i
  ONIVA10G10170.1 268 ENESLLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKII 359
                      45666677789999999888899999********999553.3589999**************************.******99999******** PP

                      CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTC CS
            START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksng 160
                      s+g      g lqlm aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng
  ONIVA10G10170.1 360 STGpsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTILPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENG 453
                      ****************************************************97666655543222333222233445999************* PP

                      EEEEEEEE-...EE--.SSXXHHHHHHHHHHHHHHHHHHHHHHTX CS
            START 161 hskvtwveh...vdlk.grlphwllrslvksglaegaktwvatlq 201
                      +skv        +++   r + +l++++ +s +  +a++  atlq
  ONIVA10G10170.1 454 YSKVLCFLIdsiTEVVmRRKVLYLVKQMTSSFTGLFASMSKATLQ 498
                      *99865432001232212233566677777777777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1549101IPR009057Homeodomain-like
SuperFamilySSF466897.94E-1851120IPR009057Homeodomain-like
PROSITE profilePS5007115.74259119IPR001356Homeobox domain
SMARTSM003891.9E-1761123IPR001356Homeobox domain
CDDcd000863.73E-1862118No hitNo description
PfamPF000463.8E-1763118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-4102144IPR009057Homeodomain-like
CDDcd146863.62E-4110147No hitNo description
PROSITE profilePS5084814.067244457IPR002913START domain
SuperFamilySSF559613.3E-14249461No hitNo description
CDDcd088756.91E-70251498No hitNo description
SMARTSM002340.0083253503IPR002913START domain
PfamPF018521.0E-16271498IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MNGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK  60
KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK  120
NNEERKLLQK ENEELKKENA ELRNRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS  180
NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA  240
NANDGYTEKN VLDLANRAME EFFSLMKENE SLLVKKKENG PLWLPHMDIL GVESLNYQEY  300
LAKSRTIGQK PVDFKVVVTR DTAIVNGSCV DLVKSLLDAN RWRELFPGIV ASANTTKIIS  360
TGPSNLHDGL LQLMRAELQV MSPEVPVCDV TFLRQSVQFG SGLWCVVDVS IDTILPGESK  420
TAQSSVQTSS TAARRMEVRL LPSGCVIEEM ENGYSKVLCF LIDSITEVVM RRKVLYLVKQ  480
MTSSFTGLFA SMSKATLQDG DDTHFAHQIV GGATGEPAGL LLSATTTIWL PGVNPRRVYD  540
HLRDEQCHGE WRCLLGEQLH QGNALPYGAP LNGETVPEFY RMVNGLHEGH AISLISPREM  600
GGNISNTLLL QEARTDLSGS LIVYARTDVN TVHSIMNSGL NPATVFLVSS GCAILPDCLE  660
SFPLHPAATA DQAGTSSAAI ASRSETGGSF VTVTYQMFFS SQGGAAPASS SIHQGRDALK  720
KATDIFKVVL DTITVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737840.0AK073784.1 Oryza sativa Japonica Group cDNA clone:J033068E17, full insert sequence.
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650915.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_015650916.10.0homeobox-leucine zipper protein ROC6-like isoform X1
TrEMBLA0A0E0ISE60.0A0A0E0ISE6_ORYNI; Uncharacterized protein
STRINGONIVA10G10170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.13e-69protodermal factor 2