PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G08290.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 665aa    MW: 77070.8 Da    PI: 8.8142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G08290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08646663926
                      GGGTS--TTTTT-SS-SS CS
          zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                      +++ G+C+yG++CkF+H+
  ONIVA10G08290.1 646 YQQQGWCPYGENCKFMHD 663
                      8999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.2E-5124167IPR003034SAP domain
SuperFamilySSF689062.01E-5125167No hitNo description
PROSITE profilePS5010314.352637665IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015639664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6639664IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-6641663IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6646663IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAAPAADDDD HRAALPREED DGEEEEGSEE EVESDDEEEE EGEGYDWSEE DDPEAASLAG  60
ICDPDAGSDD DPTFDPAADG DLEVDAVLRS RMARMSLSSA RKDRKGSRMP KMGKEEMDLL  120
AMVDKLMHDG QLEKLKVYEC KAYLRMHKLR LSGNKEVLLT RIREQIEKKG APRGVKGHLC  180
GQRTNAGRII KESYGTKKQQ HTFTIEILWS RGYKPWPPLH PLLIKGRNLY KDKTMRQPWL  240
DEEERNRALQ EKHARGYVAR KTREVRIKDK ENERMRRLNR NKENKSKGQD NMNKKSSQAV  300
FPQHTVTTNT VQKRAEKIIP SLQHGESGNS SQQHLSSKQT PTEQFLHYLP PFPHPQQHNE  360
VLLQKGTSRT STTQLINHQA PSLQHAVKVE TTQQQQQQQP PKSIKPAPIQ QSSAYPQQYP  420
KHQHHNQALP RVPPSQEQRA AVSQTSAARQ DFTNHQAPPS RQHGGSENMR RQEISSRPIP  480
TPTPQQAVSY TQQQPPNHQY RNEAFWQQGG TSTSRTGFMD RQSNNWGSTD HDKPAFQPFT  540
QKAKTYQHGS NGSGHHQARV DRETHQPLRS RNKDYHWEDQ SYHHQQNHHQ NYYGHRQMSQ  600
DQYHHQQNHH QNYHGRQGIN GNQYHDRQNH NQNPQRFRPW KPCFIYQQQG WCPYGENCKF  660
MHDLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799360.0AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAC0917340.0AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876398.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A0E0IRP10.0A0A0E0IRP1_ORYNI; Uncharacterized protein
STRINGONIVA10G08290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]