PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G01090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 234aa MW: 26026.2 Da PI: 10.6534 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 295.3 | 2.4e-90 | 40 | 234 | 107 | 301 |
GAGA_bind 107 sidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvl 198 ++++ + +pq ++++ + ++ee+++ + +ee++++++e + +kkrq++++pk+++ kk+kk +++++++ +++sa+ +r++ + k+i++v+ ONIVA10G01090.1 40 MMQHQPE-PQPQPQPPPSPpHPKEECISLPLMEENVPVISEPPPPKKRQQGRQPKVPRPKKPKK-PAAPREDGAPPSAPaPRRRGPMKNIGMVI 131 4443333.44777777777799******************************************.9999********999************** PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292 ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+stkr gaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkH ONIVA10G01090.1 132 NGIDLDLSRIPTSICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSTKRHGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKH 225 ********************************************************************************************** PP GAGA_bind 293 Gtnkfvtir 301 Gtnkfvtir ONIVA10G01090.1 226 GTNKFVTIR 234 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 6.4E-123 | 1 | 234 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.6E-95 | 14 | 234 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MPPPPAATEA PPSMPMNFVR NDIWMHPQQQ HHHHPREPKM MQHQPEPQPQ PQPPPSPPHP 60 KEECISLPLM EENVPVISEP PPPKKRQQGR QPKVPRPKKP KKPAAPREDG APPSAPAPRR 120 RGPMKNIGMV INGIDLDLSR IPTSICSCTG APQQCYRWGA GGWQSACCTT TVSTYPLPMS 180 TKRHGARIAG RKMSHGAFKK VLEKLAGEGY NLNNPIDLKT FWAKHGTNKF VTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC078891 | 0.0 | AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence. | |||
GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY570520 | 0.0 | AY570520.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C gene, complete cds. | |||
GenBank | AY570521 | 0.0 | AY570521.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876706.1 | 1e-122 | barley B recombinant-like protein A isoform X2 | ||||
Refseq | XP_025876708.1 | 1e-122 | barley B recombinant-like protein B isoform X2 | ||||
Swissprot | P0DH88 | 1e-118 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 1e-118 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0IP33 | 1e-170 | A0A0E0IP33_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G01090.1 | 1e-170 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-59 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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