PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G01080.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BBR-BPC

Protein Properties

Length: 828aa MW: 90819.3 Da PI: 9.5803

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G01080.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	403.8	2.2e-123	1	342	1	301
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd....................... 57 mddd+s++ r +g ++e+ ++nlglqlmss++ +rd+k+ +++++ +++++++++rd ONIVA10G01080.2 1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhhqHQQQHVPHHHHQPHHPRDcgangnanggamppppateapps 90 9*****66.77799...88*******99***********99777777******************************* PP GAGA_bind 58 ..maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaee 143 m+f+++d++++ +++++++r++k+l++l+v ++++ +++pvg+++++gt++++++qq++epq ++++ + +++ee+++++ iee++++ ONIVA10G01080.2 91 mpMNFVRSDMWMHPqqQQQHHHPREHKVLHNLTVGHGSShiaHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPPPqQPKEECISSPLIEENVPV 184 ********9754778999**********9988999***********************99999899************ PP GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236 ++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCt ONIVA10G01080.2 185 IDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCT 277 **********************.88999***999************************************************ PP GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir ONIVA10G01080.2 278 TTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 342 **************************************************************8 PP
2	GAGA_bind	401.9	8.1e-123	484	824	1	300
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd....................... 57 mddd+s++ r +g ++e+ ++nlglqlmss++ +rd+k+ +++++ +++++++++rd ONIVA10G01080.2 484 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhhqHQQQHVPHHHHQPHHPRDcgangnanggamppppateapps 573 9*****66.77799...88*******99***********99777777******************************* PP GAGA_bind 58 ..maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaee 143 m+f+++d++++ +++++++r++k+l++l+v ++++ +++pvg+++++gt++++++qq++epq ++++ + +++ee+++++ iee++++ ONIVA10G01080.2 574 mpMNFVRSDMWMHPqqQQQHHHPREHKVLHNLTVGHGSShiaHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPPPqQPKEECISSPLIEENVPV 667 ********9754778999**********9988999***********************99999899************ PP GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236 ++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCt ONIVA10G01080.2 668 IDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCT 760 **********************.88999***999************************************************ PP GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 ttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti ONIVA10G01080.2 761 TTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 824 *************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.4E-201	1	342	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.4E-118	1	342	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.6E-199	484	825	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.4E-117	484	824	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence Send to blast
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHQH QQQHVPHHHH 60 QPHHPRDCGA NGNANGGAMP PPPATEAPPS MPMNFVRSDM WMHPQQQQQH HHPREHKVLH 120 NLTVGHGSSH IAHHDPVGYG MIPGTHTLQM MQQQTEPQPQ PPPPPQQPKE ECISSPLIEE 180 NVPVIDEPPP PKKRQQGRQP KVPRAKKPKK SAAPREDGAP PNAPAPRRRG PRKNIGMVIN 240 GIDLDLSRIP TPVCSCTGAP QQCYRWGAGG WQSACCTTTI STYPLPMSTK RRGARIAGRK 300 MSHGAFKKVL EKLAGEGYNL NNPIDLKTFW AKHGTNKFVT IRAHSSWALL PSLSDDGLYD 360 QEILDVAPLQ AQPSSPEVTP AVLQIPMAPE ILDVAPLQAQ PSSPEVTPAV LQIPMAPDIS 420 SLSVSGADLH PPAEQRPAPP PPPSVPPKRF NFWDVRRWSR PCAAPLLFES GGWSVGFGGG 480 GGEMDDDASM SIRWGGFFES PARNLGLQLM SSVPADRDTK QLLSGSPFLH HQHQQQHVPH 540 HHHQPHHPRD CGANGNANGG AMPPPPATEA PPSMPMNFVR SDMWMHPQQQ QQHHHPREHK 600 VLHNLTVGHG SSHIAHHDPV GYGMIPGTHT LQMMQQQTEP QPQPPPPPQQ PKEECISSPL 660 IEENVPVIDE PPPPKKRQQG RQPKVPRAKK PKKSAAPRED GAPPNAPAPR RRGPRKNIGM 720 VINGIDLDLS RIPTPVCSCT GAPQQCYRWG AGGWQSACCT TTISTYPLPM STKRRGARIA 780 GRKMSHGAFK KVLEKLAGEG YNLNNPIDLK TFWAKHGTNK FVTISCLV

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence Send to blast

MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHQH QQQHVPHHHH  60
QPHHPRDCGA NGNANGGAMP PPPATEAPPS MPMNFVRSDM WMHPQQQQQH HHPREHKVLH  120
NLTVGHGSSH IAHHDPVGYG MIPGTHTLQM MQQQTEPQPQ PPPPPQQPKE ECISSPLIEE  180
NVPVIDEPPP PKKRQQGRQP KVPRAKKPKK SAAPREDGAP PNAPAPRRRG PRKNIGMVIN  240
GIDLDLSRIP TPVCSCTGAP QQCYRWGAGG WQSACCTTTI STYPLPMSTK RRGARIAGRK  300
MSHGAFKKVL EKLAGEGYNL NNPIDLKTFW AKHGTNKFVT IRAHSSWALL PSLSDDGLYD  360
QEILDVAPLQ AQPSSPEVTP AVLQIPMAPE ILDVAPLQAQ PSSPEVTPAV LQIPMAPDIS  420
SLSVSGADLH PPAEQRPAPP PPPSVPPKRF NFWDVRRWSR PCAAPLLFES GGWSVGFGGG  480
GGEMDDDASM SIRWGGFFES PARNLGLQLM SSVPADRDTK QLLSGSPFLH HQHQQQHVPH  540
HHHQPHHPRD CGANGNANGG AMPPPPATEA PPSMPMNFVR SDMWMHPQQQ QQHHHPREHK  600
VLHNLTVGHG SSHIAHHDPV GYGMIPGTHT LQMMQQQTEP QPQPPPPPQQ PKEECISSPL  660
IEENVPVIDE PPPPKKRQQG RQPKVPRAKK PKKSAAPRED GAPPNAPAPR RRGPRKNIGM  720
VINGIDLDLS RIPTPVCSCT GAPQQCYRWG AGGWQSACCT TTISTYPLPM STKRRGARIA  780
GRKMSHGAFK KVLEKLAGEG YNLNNPIDLK TFWAKHGTNK FVTISCLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00253	DAP	Transfer from AT2G01930	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612725.1	0.0	barley B recombinant-like protein A isoform X1
Refseq	XP_015612727.1	0.0	barley B recombinant-like protein A isoform X1
Refseq	XP_015612730.1	0.0	barley B recombinant-like protein B isoform X1
Refseq	XP_015612731.1	0.0	barley B recombinant-like protein B isoform X1
Swissprot	P0DH88	0.0	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	0.0	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A0E0IP29	0.0	A0A0E0IP29_ORYNI; Uncharacterized protein
STRING	ONIVA10G01080.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-56	basic pentacysteine 2

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]