PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G00410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33154.5 Da    PI: 8.479
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G00410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-18144198256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  ONIVA10G00410.1 144 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 198
                      788899***********************************************98 PP
2HD-ZIP_I/II125.22.9e-40144232190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  ONIVA10G00410.1 144 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 232
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-18131201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-17131199IPR009057Homeodomain-like
PROSITE profilePS5007117.006140200IPR001356Homeobox domain
SMARTSM003892.1E-15142204IPR001356Homeobox domain
CDDcd000862.67E-15144201No hitNo description
PfamPF000463.2E-15144198IPR001356Homeobox domain
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
PfamPF021832.0E-10200233IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.0E-21200243IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPCFLSYMYG PPCPHSPSPF FLISHRLYSY LPSSLSRARA STQERGREVW WMAQDDEDVG  60
LALGLSLGSG GHRRQRESRD EAPSSAAASL LTLRLPAESG GQPQVVVKRE VVRAEEEEYE  120
YEYERALYSS SAAAADDDEG CNSRKKLRLS KEQSALLEDR FKEHSTLNPK QKVALAKQLN  180
LRPRQVEVWF QNRRARTKLK QTEVDCELLK RCCETLTEEN RRLHRELQQL RALTHSTAAG  240
FFMATTLPVP AATLSICPSC ERLATAAAAG ASPTAAADRT NKPTAPHLFS PFAKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148SRKKLRL
2192200RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612921.11e-178homeobox-leucine zipper protein HOX15
SwissprotQ7G7371e-179HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA0A0E0INV50.0A0A0E0INV5_ORYNI; Uncharacterized protein
STRINGONIVA10G00410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-58HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]