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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ONIVA09G17830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
TCP |
| Protein Properties |
Length: 381aa MW: 38784.1 Da PI: 4.76 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA09G17830.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 103 | 4.9e-32 | 122 | 210 | 5 | 94 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94
r+ ++h kv+gR+RR+R++++caar+ +L++eLG+++d++ti WL+qq++pai ++tgt++ +a +++++ + ++s ++aa+ +
ONIVA09G17830.1 122 PPRNRDRHVKVEGRGRRIRMPVNCAARIAQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGTVPA-IANTVDGVLRIPTESPSAAARGD 210
5799*********************************************************88888.23444555444433333333333 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MASQLQGKGA ETAAAGERVA PGTNAAAFAG LGYPPIQSPV ALQEEEGPRD AAFAGYAPIR 60
SPVVSRLQEK GEGEGEEEEV DKREEAGMAA DGSAFAAGMA LVPKPEPVAV EFLRGLAVAK 120
PPPRNRDRHV KVEGRGRRIR MPVNCAARIA QLTRELGHKS DGETIRWLMQ QSEPAIVAAT 180
GTGTVPAIAN TVDGVLRIPT ESPSAAARGD EPAPKRRRKL QPTRAAAGGP VEALAAAPPP 240
AVYYPIVADP LLQANGGGSI SISSGLAPAS SATPPTATGG GAIPFIAMPA TSDGGKQAMS 300
PATVWMVPPG GAGAVNQPIQ YWAFQPNPDH ANFAGASSYN VGQNPGVHEA SAADHAASTG 360
GGGGGEDDEY EGMTDSSSDE E
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP006175 | 0.0 | AP006175.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0669G04. |
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
