PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G11170.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 398aa    MW: 42767 Da    PI: 4.5973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G11170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19137186255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  ONIVA09G11170.1 137 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 186
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-32137195No hitNo description
SMARTSM003801.2E-36137200IPR001471AP2/ERF domain
PROSITE profilePS5103223.933137194IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22137195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-32137195IPR001471AP2/ERF domain
PfamPF008476.7E-12138186IPR001471AP2/ERF domain
PRINTSPR003672.7E-11138149IPR001471AP2/ERF domain
PRINTSPR003672.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAAAAKKQQG RRVTADVLWP GMLRKGKAAA AEEDFEADFR  60
EFERGMSDDE AEGGGGEEEE EEEDDVVVVV PPPAAARFVV RAAAKAAPPT ADGMLTTKLV  120
QHDGPTARSA KRKRKNQYRG IRQRPWGKWA AEIRDPSKGV RVWLGTYNTA EEAARAYDAE  180
ARKIRGKKAK VNFPDEPAVA QKLSLKQNAA KQEKLAPPLK TCGDDAFFQL NSSDNDLFAM  240
LAKVPAKPAE PVDLMPPVKP LASTETFEMN MLSDTSSNSF GSSDFGWEDD TLTPDYTSVF  300
VPNAAMPAYG EPAYLTGGAP KRMRNNYGIA VPQGNGMPNL AQNMPAVDPE MKYLPLPYVE  360
SSSDESMDNL LQNDATQDGA SNEGIWSLDE LLMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20137194260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20137194563ATERF1
3gcc_A9e-20137194563ATERF1
5wx9_A3e-191371961474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8313920.0AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0IJZ50.0A0A0E0IJZ5_ORYNI; Uncharacterized protein
STRINGONIVA09G11170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-27related to AP2 12