PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G09150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 538aa    MW: 60788.6 Da    PI: 9.6493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G09150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07350391240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  ONIVA09G09150.1 350 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 391
                      68***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.5E-12165IPR001623DnaJ domain
SuperFamilySSF465659.42E-11181IPR001623DnaJ domain
CDDcd062578.08E-4146IPR001623DnaJ domain
PROSITE profilePS5007611.259157IPR001623DnaJ domain
PfamPF002266.7E-9154IPR001623DnaJ domain
PROSITE patternPS0063603453IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.959344399IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4345391IPR009057Homeodomain-like
SMARTSM007171.4E-5348401IPR001005SANT/Myb domain
PfamPF002492.7E-6350391IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-7350393IPR009057Homeodomain-like
CDDcd001671.87E-4351391No hitNo description
SMARTSM007173.3E-6478530IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-8479527IPR009057Homeodomain-like
PfamPF002491.4E-5481523IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-4481523IPR009057Homeodomain-like
CDDcd001677.99E-5481523No hitNo description
PROSITE profilePS500906.098482523IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MALKHHPDKQ ASLILAEATE EAKQAKKDEI ESHFKAIQEA YEVLIDPTKR RIFDSTDEFD  60
DDIPTDCAPQ DFYKVFGPAF MRNGRWSVNQ TIPSLGDDAT PVEEVDKFYN FWYNFKSWRE  120
FPHADEYDLE QAESREHKRW MERQNAKLQE KAKKVEYARV RTLVDNAYKK DPRIQRRKEE  180
EKAEKQRRKE AKYLAKKMQE EEAAKAAEEE RKRKEEEAKR AAEAALNQKK LKEKEKKLLR  240
KEKTRLRNLV APVVAESHFS LSEDDVETAC SSLDMERLKK LCDSMENKDT TEKARLLRGA  300
LSKEGSSGTS NEGKKIQANG VDGSKAKSTS SGEKVTQGNT LSNYEKKEEK PWGREEIELL  360
RKAIQKYPKG TSRRWEVVSE FIGTGRSVEE ILKATKTVLL QKPDSTKAFD SFLEKRKPAP  420
SIASPLSVRT ETVGLPTEKA SGDASSKAPA QPASSKTSDE KAPAPAPVSN GTPSGTADPE  480
AWSEAQVLAL VQALKAFPKD ASQRWERVAA AVPGKTMVQC KKKVAEMQKN FRSKKGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-197117520124Zuotin
5dje_B2e-197117520124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210231RKRKEEEAKRAAEAALNQKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0E0IJA60.0A0A0E0IJA6_ORYNI; Uncharacterized protein
STRINGONIVA09G09150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-166DnaJ domain ;Myb-like DNA-binding domain