PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G00040.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 489aa    MW: 54407.5 Da    PI: 10.3299
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G00040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.88.2e-1082169397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ +
  ONIVA09G00040.1  82 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 167
                      9************************65..56789999999999865278899********9999998888......556899************ PP

           DUF573  96 Wg 97 
                      W 
  ONIVA09G00040.1 168 WV 169
                      *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-1382168IPR007592Protein of unknown function DUF573
PfamPF030171.8E-17392446IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKKPSQEEE ALPLPLPLPP PDRKRKKASE PVNSPERAKK  60
KKKTATPHEP PSAKQQKRPL PFQRTWSPND EVLILEAMAA HRQEHGKVPT AAELFPVLNG  120
RLDRKRLTYK KLADKLRTFM RRHGRDAKNG PPTQAHDRRL YDLSRNVWVS QTQPPNLSAN  180
ANSNIAGGQP NQHDAMPTAG KAFVKMRDSY PNLTQALLLL VGTDLEKSLT AIDETKAQAL  240
DLKVSNLKKE LSEAVMESAT IQSTESSKIP CFPSTKLQPE FGAEIEKNFQ LEHLDEMKGA  300
QSQQMVDSKQ QQDKSSAKGI ICESSESGLR SIVADNNILC NTLQKEMVIQ QKLSCGKTKE  360
VTSKHRHPQK GELRRVTMHG QKEDTNNEGG KEVLLLSTTR PHIPVAKATL QTSSGSKFVG  420
GMPLGSEWYQ VFVNDVLKPE APLLRPPGMK MAEALKSIIA WPCAQVTDKA DFMSETKLYR  480
FAHYKGCGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11324DKKKKKKKKKKP
21423KKKKKKKKKK
31523KKKKKKKKK
41723KKKKKKK
54246RKRKK
64462RKKASEPVNSPERAKKKKK
75561ERAKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610933.10.0uncharacterized protein LOC4346364 isoform X1
TrEMBLA0A0E0IFZ00.0A0A0E0IFZ0_ORYNI; Uncharacterized protein
STRINGONIVA09G00040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-11DNA-binding storekeeper protein-related transcriptional regulator