PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G26190.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 530aa    MW: 54940.1 Da    PI: 9.1126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G26190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-054870123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k F r  nL+ H r H
  ONIVA08G26190.1 48 FVCEVCNKGFQREQNLQLHRRGH 70
                     89*******************88 PP
2zf-C2H213.20.00026124146123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  ONIVA08G26190.1 124 WKCDKCNKRYAVQSDWKAHSKTC 146
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-64770IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.75E-84770No hitNo description
SMARTSM003550.00414870IPR015880Zinc finger, C2H2-like
PfamPF121713.4E-54870IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0944870IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SMARTSM0035514089119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5112145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.75E-8119144No hitNo description
SMARTSM00355110124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAAASSAHYF GLGEPQMQQQ QQQPPLQNNA AAPVVALSPH TLLATNRFVC EVCNKGFQRE  60
QNLQLHRRGH NLPWKLKQKN PKETRRRVYL CPEPSCVHHD PSRALGDLTG IKKHYSRKHG  120
EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESG  180
RIMPPMGAAL YAGAGAGMAI GGLTGMAASH QLQPFQDHSS AITTAANAAA QFDHLMATSS  240
AAAGSPAFRA AQPTSSSSSP FYLGGGGDDG QAHTSLLHGK PAFHGLMQLP EQQGSNGGGL  300
LNLSYFSGGN GGHHHHHQEG RLVFPDQFNG VAAGNGARAG SGEHGNSGNN ADSGSIFSGN  360
MMGGGGGFSS LYSSSDQTVP PPQMSATALL QKAAQMGATT SSGGAGSVNS LLRGLGSGGG  420
GGALNGKPAG AAGFIMSGES SSRSTASQTA ENESQLRELM MNTLSATGGG TGAGTVFVGG  480
GFPGVDDGKL STRDFLGVSG GAPGLQLRHG GAAGMGMAGS LDQEMKWINW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33120182365Zinc finger protein JACKDAW
5b3h_F1e-33120182365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721280.0AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBankAK0998300.0AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650033.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883278.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883279.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883280.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883281.10.0protein indeterminate-domain 6, chloroplastic
TrEMBLA0A0E0IFL90.0A0A0E0IFL9_ORYNI; Uncharacterized protein
STRINGONIVA08G26190.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-96indeterminate(ID)-domain 5