PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G20930.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 582aa MW: 65934.9 Da PI: 5.8818

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G20930.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	517	543	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C+++ rtG+C+ Gd C +aH++ ONIVA08G20930.2 517 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 543 79***********************97 PP
2	zf-CCCH	32.3	1.6e-10	555	580	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+te+Cr+++++ C+yGd+C++ H+ ONIVA08G20930.2 555 YRTEPCRYWLAGKGCWYGDKCRYKHS 580 89*******99**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.873	516	544	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.94E-8	516	548	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.011	516	543	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.1E-11	518	547	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.6E-9	552	581	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-7	553	581	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.868	554	582	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-7	554	581	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-8	555	580	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI 60 EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV 120 FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK 180 VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA 240 RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI 300 YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF 360 LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM 420 FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY 480 YGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA 540 HSQDELRVID AGPKYRTEPC RYWLAGKGCW YGDKCRYKHS TD

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK  180
VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA  240
RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI  300
YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF  360
LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM  420
FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY  480
YGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA  540
HSQDELRVID AGPKYRTEPC RYWLAGKGCW YGDKCRYKHS TD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004620	0.0	AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBank	AP004762	0.0	AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883283.1	0.0	putative zinc finger CCCH domain-containing protein 57 isoform X2
Swissprot	A3BUD2	0.0	C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBL	A0A0E0IDN8	0.0	A0A0E0IDN8_ORYNI; Uncharacterized protein
STRING	ONIVA08G20930.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	5e-15	C3H family protein