PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G19780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 381aa    MW: 41474.9 Da    PI: 9.9975
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G19780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.2e-34271242103
                      HHHHHHHHHCTGGGTTTSEES.SSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                      Fl+k+y++++d+++++++sw  ++g    +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+
  ONIVA08G19780.1  27 FLTKTYQLVDDPATDHVVSWGdDDGgesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGE 111
                      9*******************9544478889****************************************999.........************ PP

                      XXXXXXXXXXXXX CS
     HSF_DNA-bind  91 kellekikrkkse 103
                      k+ll++i+r+ks+
  ONIVA08G19780.1 112 KQLLCEIHRRKSA 124
                      **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3516116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5523121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3124121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-2927121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEWEEESEAA RQKAAAAASA SVVPAPFLTK TYQLVDDPAT DHVVSWGDDD GGESASSFVV  60
WRPPEFARDI LPNYFKHSNF SSFVRQLNTY GFRKVVPERW EFANEFFRKG EKQLLCEIHR  120
RKSAAATWPP FPPPPPPFFA PRHFAAGAFF RHGDGMLHGR LGALVTTTER RHWFESAALP  180
VAPSSRLLSQ LGPVIAPARR AAATPEEEAL MQDNHRLLRG NAALVQELAH MRKLYSDIIY  240
FVQNHVRPVA PSPAAAAALH GLGVLRPPPA GGKAPASEVR GASGRSATSS SSFTVAEDQP  300
TLLALRLPRT TEKIINEVSG GNGGGRTKLF GVHLSSADEQ TSSGASRKRS PPQEQPPTSP  360
APKRTLVVEH SELRLSIVSP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221612119129Heat shock factor protein 1
5d5v_B2e-221612119129Heat shock factor protein 1
5d5v_D2e-221612119129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.10.0putative heat stress transcription factor B-4a
SwissprotQ6Z9R80.0HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLA0A0E0ID860.0A0A0E0ID86_ORYNI; Uncharacterized protein
STRINGONIVA08G19780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-75heat shock transcription factor B4