PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G18470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25980.7 Da PI: 4.6227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.1e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g ONIVA08G18470.1 26 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 75 7******99.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 26 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-18 | 26 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-31 | 26 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-10 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 26 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.87E-17 | 26 | 87 | No hit | No description |
PRINTS | PR00367 | 1.6E-8 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDHIGISGVG EGGVVSPAQP SSPERRYKGV RLRKWGRWVS EIRMPNSRER IWLGSYESAE 60 KAARAFDAAA VCLRGSRGAG SLNFPESPPP DVRRRFPGAA LTVEQIQAEA ARHANRRFPA 120 NTAAAGGSSS YSISQRQEAA APARSTSNDD TAMSSVPSTD GGAADYDGGD DVIDWSFMDT 180 LPAMSSSAAS TNADLVPAMD DFMYGFLHTM PPSPCEDGGE DVMIDGNCNM DQTFFSVDLW 240 RF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649307.1 | 1e-150 | ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0E0ICU0 | 1e-176 | A0A0E0ICU0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G18470.1 | 1e-177 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-24 | ERF family protein |