PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G17170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 251aa MW: 27192.6 Da PI: 8.4439 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94 | 1.2e-29 | 158 | 213 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAa++GghavDGC+Ef+++ geegt al+CaACgCHR+FHRr v+ ONIVA08G17170.1 158 GRVRYGECRRNHAARMGGHAVDGCREFLAE-GEEGTGGALRCAACGCHRSFHRRVVV 213 579**************************8.999********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.1E-28 | 160 | 212 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-13 | 160 | 208 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.4E-23 | 161 | 210 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.749 | 162 | 211 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRFLSYAWA IIWASISWIG GPLDTGLVVW WRYREEIGQS EDATRDGNCA RLPVYPRAGG 60 TQDSAKRTAS RSHHVAAVSL QRRLGEQREQ EYVARATRGH RDALQRDRQI TECDESGRSG 120 SINAMMKRMV ILRRCEPPPP PPPQPAAAVV AAMGGCCGRV RYGECRRNHA ARMGGHAVDG 180 CREFLAEGEE GTGGALRCAA CGCHRSFHRR VVVVQQCCAC DTAAAAAAAG GWEWRDCSPE 240 SSSSASSTTA S |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT831443 | 0.0 | CT831443.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034C07, full insert sequence. | |||
GenBank | CT831444 | 0.0 | CT831444.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001I02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0ICC2 | 0.0 | A0A0E0ICC2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G17170.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 2e-18 | mini zinc finger 1 |