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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA08G17040.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MYB |
Protein Properties |
Length: 369aa MW: 38540.9 Da PI: 8.0537 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA08G17040.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 83 | 128 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l ++v+++G+ +W++Ia ++ gR++k+c++rw++
ONIVA08G17040.1 83 RGHWRPAEDAKLRELVALYGPQNWNLIADKLD-GRSGKSCRLRWFNQ 128
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 136 | 178 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+
ONIVA08G17040.1 136 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 178
68*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MPCTSAAWML HVGGAAAEQA SSSSSSKGGG RVVTAGTTTM DTGGYNNGGG GGGGGGNGRG 60 VGDHQESSSS GGGGGQSSRL AARGHWRPAE DAKLRELVAL YGPQNWNLIA DKLDGRSGKS 120 CRLRWFNQLD PRISKRPFSD EEEERLMAAH RFYGNKWAMI ARLFPGRTDN AVKNHWHVIM 180 ARKYREQSTA YRRRKLNQAV QRKLDATTAS DVVVAHHHPY AAAHDPYAFT FRHYCFPFPA 240 ASPAAADEPP FTCLFPGTAA TAGRGGVGGM TWPDAMAAGE VIDDGAGGGR YVVAEPPPPF 300 LVPAAPHGWL GGHEMMVMVN DGGDVAAGVA SSYDGMIGRD QGGGGSHFEA AAAAAAAPAF 360 IDFLGVGAT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |