PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 273aa MW: 29540.8 Da PI: 6.6917

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G04140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.7	4.3e-11	77	133	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g ONIVA08G04140.1 77 SRYHGVTRLKWSGKFEAHLWDnSSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 133 79*****************55558777778888.999999************98 PP
2	AP2	50.1	6.7e-16	178	232	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g+ ONIVA08G04140.1 178 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 232 67***999.9**99953323..36******99***********995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.49E-11	77	145	No hit	No description
Pfam	PF00847	2.9E-8	77	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-11	77	144	IPR016177	DNA-binding domain
PROSITE profile	PS51032	15.791	78	143	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-13	78	149	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-10	78	144	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-11	178	231	IPR001471	AP2/ERF domain
CDD	cd00018	4.40E-20	178	241	No hit	No description
SuperFamily	SSF54171	2.29E-17	178	241	IPR016177	DNA-binding domain
SMART	SM00380	3.8E-25	179	245	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.7E-19	179	239	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.518	179	239	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-8	180	191	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-8	221	241	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG 60 GKLVAETMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNSS QVEGRKRKGK HGSYVTEENA 120 ARAHDLAALK YWGAGPNTKL NFNVSDYEKE IERMKTMSQD EFVVYIRRQS SCFSRGTSSY 180 RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR GAHAVTNFDI 240 SNYCEDGLKK LEASSEVPKL LEGPSKAAKL AGR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY685118	0.0	AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650903.1	1e-155	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q84Z02	1e-65	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A0D3GWT0	0.0	A0A0D3GWT0_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0I7N4	0.0	A0A0E0I7N4_ORYNI; Uncharacterized protein
TrEMBL	A2YRN8	0.0	A2YRN8_ORYSI; Uncharacterized protein
STRING	ONIVA08G04140.1	0.0	(Oryza nivara)
STRING	OBART08G04290.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-66	AP2 family protein

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]