PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G02450.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 790aa    MW: 84630 Da    PI: 6.3929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G02450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-21118173156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  ONIVA08G02450.1 118 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 173
                      688999***********************************************999 PP
2START200.95.4e-632945201206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a+++ep+W      e + ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tle
  ONIVA08G02450.1 294 ELAVAAMEELVRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATLE 386
                      57899********************99999*********998889*******************************.99999999999****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EE.SSEEEEEEEECTCEEEEEE CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRael.lpSgiliepksnghskvtw 166
                      v+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d  +       ++  +R+++ +pSg+li++++ng+skvtw
  ONIVA08G02450.1 387 VLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGggcQPAAARGHRrRPSGCLIQEMPNGYSKVTW 480
                      ************************************************************9999********8537****************** PP

                      EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      vehv+ +++++h+l++++v+sg+a+ga++wvatl+rqce+
  ONIVA08G02450.1 481 VEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 520
                      **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-23104173IPR009057Homeodomain-like
SuperFamilySSF466892.55E-20105175IPR009057Homeodomain-like
PROSITE profilePS5007117.394115175IPR001356Homeobox domain
SMARTSM003891.1E-20116179IPR001356Homeobox domain
CDDcd000867.53E-20117176No hitNo description
PfamPF000462.4E-18118173IPR001356Homeobox domain
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PROSITE profilePS5084843.25285523IPR002913START domain
SuperFamilySSF559615.5E-34286522No hitNo description
CDDcd088753.53E-120289519No hitNo description
SMARTSM002347.2E-60294520IPR002913START domain
PfamPF018521.1E-52295520IPR002913START domain
Gene3DG3DSA:3.30.530.203.9E-5360519IPR023393START-like domain
SuperFamilySSF559611.86E-25540763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MSPAMIGRPN GGGGGGGVAY ASSSSALSLG QSLLDGHHHQ LPSLLQQHHN GHHLLDQHQQ  60
HQHQLPPQAT TTSESDGRAP RDELEMSKSG GSDNLESGGG GGGGGSGDDQ DPNQRPRKKR  120
YHRHTQHQIQ ELEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQHERHE  180
NNALRAENEK LRAENMRYKE ALANASCPNC GGPAAIGEMS FDEHHLRLEN ARLRDEIDRI  240
SAIAAKYVGK PAAAVSAAYP PLPPSNRSPL DHMGIPGAGA DVFGADFDKP LVIELAVAAM  300
EELVRMAQLG EPLWAPALGG EALGEEEYAR TFPRGLGPKS PELRSEASRE TAVVIMNHVS  360
LVEMLMDVGQ WTALFSSIVS RAATLEVLST GVAGNHNGAL QLMSAEFQMP SPLVPTRETQ  420
FLRYCKQHPD GTWAVVDVSL DGLRAGAGGG CQPAAARGHR RRPSGCLIQE MPNGYSKVTW  480
VEHVEADDQM VHNLYKPVVN SGMAFGARRW VATLERQCER LASAMASNVA SSGDAGVITT  540
SEGRRSMLKL AERMVASFCG GVTASTTHQW TTLSGSGAED VRVMTRKSVD DPGRPPGIIL  600
NAATSFWLPV PPSRVFDFLR DDSTRSEWDI LSNGGVVQEM AHIANGRDHG NAVSLLRVNN  660
ANSNQSNMLI LQESCTDASG SYVIYAPVDV VAMNVVLNGG DPDYVALLPS GFAILPDGPD  720
GGGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVE RIKAAITGDN GVAPPCPRGS  780
REGSRANSEV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0E0I7300.0A0A0E0I730_ORYNI; Uncharacterized protein
STRINGONIVA08G02450.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2