PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 570aa MW: 62288.3 Da PI: 4.2387

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G23540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	113	131	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 kC Cg++Fs++s+L H+ ONIVA07G23540.1 113 KCWSCGQVFSSNSELCGHL 131 7***************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.12E-33	33	173	No hit	No description
Pfam	PF12756	2.5E-6	59	132	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	80	IPR007087	Zinc finger, C2H2
PROSITE profile	PS51678	56.496	255	570	IPR025799	Protein arginine N-methyltransferase
Gene3D	G3DSA:3.40.50.150	3.1E-39	255	415	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	4.29E-56	261	517	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	1.86E-11	296	415	No hit	No description
Pfam	PF13649	1.3E-11	297	412	No hit	No description
Gene3D	G3DSA:2.70.160.11	1.8E-8	419	476	No hit	No description
Gene3D	G3DSA:2.70.160.11	2.7E-11	478	551	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006479	Biological Process	protein methylation
GO:0005829	Cellular Component	cytosol
GO:0008168	Molecular Function	methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MATREYELRP EQERLGEDRE EYEDGEEEEE EEEGEEGWDD WESDGDDAGG GGGGGGLLCL 60 FCSARFDSES SLFSHCASEH RFDFYRVVKE TGMDFYGCIK LINFVRSKVA ENKCWSCGQV 120 FSSNSELCGH LHALEIPQLE GKVPWGDDVY LKPFLEDDSL LHSLSVFDDD DEDDCGMPME 180 KGGCSAGNGS LAETCESNLK SIINDGSDVI DRFERTCTIE STDGECSGSL AQEPSDKQLK 240 IARASAAARG IKSVDENYFG SYSSFGIHRE MLGDKVRTEA YRDALLGNPS LMNGATVLDV 300 GCGTGILSLF AAKAGASRVI AVDGSAKMVS VATEVAKSNG FLYDENMEMQ QKRDTQVITV 360 VHTKAEELNH KIQVPSNKFD VLVSEWMGYC LLYESMLSSV LYARDHFLKP GGAILPDTAT 420 IFGAGFGKGG TSLPFWENVY GFDMSCIGKE VTGNSARFPV VDILASEDIV TETAVLNEKP 480 VNLSTSPFST PTHWSQTIFT FEEPIAMAKE ESAVVSSASV GTDECPAVMI RSRISIVRAS 540 EHRSIDISIE TTGISSDGRK RSWPVQIFNL

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MATREYELRP EQERLGEDRE EYEDGEEEEE EEEGEEGWDD WESDGDDAGG GGGGGGLLCL  60
FCSARFDSES SLFSHCASEH RFDFYRVVKE TGMDFYGCIK LINFVRSKVA ENKCWSCGQV  120
FSSNSELCGH LHALEIPQLE GKVPWGDDVY LKPFLEDDSL LHSLSVFDDD DEDDCGMPME  180
KGGCSAGNGS LAETCESNLK SIINDGSDVI DRFERTCTIE STDGECSGSL AQEPSDKQLK  240
IARASAAARG IKSVDENYFG SYSSFGIHRE MLGDKVRTEA YRDALLGNPS LMNGATVLDV  300
GCGTGILSLF AAKAGASRVI AVDGSAKMVS VATEVAKSNG FLYDENMEMQ QKRDTQVITV  360
VHTKAEELNH KIQVPSNKFD VLVSEWMGYC LLYESMLSSV LYARDHFLKP GGAILPDTAT  420
IFGAGFGKGG TSLPFWENVY GFDMSCIGKE VTGNSARFPV VDILASEDIV TETAVLNEKP  480
VNLSTSPFST PTHWSQTIFT FEEPIAMAKE ESAVVSSASV GTDECPAVMI RSRISIVRAS  540
EHRSIDISIE TTGISSDGRK RSWPVQIFNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6nt2_A	1e-54	217	507	9	325	Protein arginine N-methyltransferase 1
6nt2_B	1e-54	217	507	9	325	Protein arginine N-methyltransferase 1
6nt2_C	1e-54	217	507	9	325	Protein arginine N-methyltransferase 1
6nt2_D	1e-54	217	507	9	325	Protein arginine N-methyltransferase 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105489	0.0	AK105489.1 Oryza sativa Japonica Group cDNA clone:001-127-B11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647334.1	0.0	probable protein arginine N-methyltransferase 3
Swissprot	A3BMN9	0.0	ANM3_ORYSJ; Probable protein arginine N-methyltransferase 3
TrEMBL	A0A0E0I4P1	0.0	A0A0E0I4P1_ORYNI; Uncharacterized protein
STRING	ONIVA07G23540.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7895	9	9

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]