PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 143aa MW: 15829.6 Da PI: 10.1824

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G19920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.7e-09	26	72	5	43
-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksr 43 T +Ed ++ + + +G+ +W+ Ia++++ gRt++++k++ ONIVA07G19920.1 26 TDQEDRIICSLYNSMGSTyslrawtnrRWSIIASKLP-GRTDNDVKNH 72 899***********99***************.*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.406	1	20	IPR017930	Myb domain
SuperFamily	SSF46689	2.31E-16	2	80	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-9	2	29	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.702	17	72	IPR017877	Myb-like domain
SMART	SM00717	0.0097	21	76	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-7	25	72	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-5	25	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-11	30	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MNRCGKSCRL RWLNYLHLGI KHSGYTDQED RIICSLYNSM GSTYSLRAWT NRRWSIIASK 60 LPGRTDNDVK NHHQPPPQQQ HHHHHHHNHR VTGGGARVTL VSPPPTPQSQ YASMQPSSAS 120 ASSSGGNACS FGAATMYSPS PST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	3	72	40	99	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269\|PubMed:24563287}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-77	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631660.1	3e-52	transcription factor MYB4-like
Swissprot	F4JSU0	2e-25	MYB87_ARATH; Transcription factor MYB87
TrEMBL	A0A0E0I3C8	1e-101	A0A0E0I3C8_ORYNI; Uncharacterized protein
STRING	ONIVA07G19920.1	1e-102	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	1e-25	myb domain protein 87

Publications ? help Back to Top
Fujiwara S, et al. Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis. Biotechnol. Lett., 2014. 36(5): p. 1049-57 [PMID:24563287]