PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G07180.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 415aa    MW: 46406.9 Da    PI: 8.9759
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G07180.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1941.8e-29100189190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+
  ONIVA07G07180.2 100 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 189
                      6*******************************************999.**********************9999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-26100189IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.754115189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGLPDTAHLQ VSNLVAAAAT EGKKKDTRRQ QESTSPRRAA PPVAAGDELA LAGATPQPYT  60
CNTAVEDSEA GPCIPRVQAA TGDYTPWLGQ EFASEHEAYE FYRYYAWKLG FSVRREYANK  120
SRKTGEITSR KFVCSREGFK APDKRTNHTR TPQPDTRTGC HANLVIRRKN DTSKYEVYAF  180
EAQHNHPLFI PSCANPLQRK LSDVQSSDAD NSGSEFKACI NDYEEEVELF TAWEAMISKY  240
NLHSNRRKKK GRNAKSQRKS CIEKGLQKTK KVQPEQSPIQ YTMLDATQPG NVLFQGLDIS  300
NPFPMGQLNY GGVQPQPGLC PSLPTVSREL GFAAYLSQPS SNSQHNQQKS TALLKVIVHI  360
CFNLQYNSWD KTGPVEDQIN FSNSYQSVIE ATKNSHLPGY IHQQHVHAML RSTTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627310.11e-102protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_015627311.11e-102protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBLA0A0E0HYL30.0A0A0E0HYL3_ORYNI; Uncharacterized protein
STRINGONIVA07G07180.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-21FAR1 family protein