PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G04120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 437aa    MW: 48856.8 Da    PI: 8.632
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G04120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.3e-16139237198
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k lt  d+ k+  r+++pk+ a+     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  +++
  ONIVA07G04120.1 139 FVKPLTCTDAVKNrYRFIVPKREAAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-DSG 229
                      56666655555554899*******766999555568888***************776665..99***********************765.444 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      e +++++r
  ONIVA07G04120.1 230 ERYMGLRR 237
                      44666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-17136236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-20137238IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-16138237No hitNo description
SMARTSM010194.0E-5139239IPR003340B3 DNA binding domain
PfamPF023626.3E-12139237IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155140239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDVSHIDRLD HLPPPKASAS AAAAKASPSS SAQAQQFSIT REMWRACAAP KSGRLPAVGS  60
FVYYFPDGHA HQCPSRPPEP LPGRVFLCKV TAVRLDATRN ELFATMSLIP VARDQAIQPQ  120
APADPGPSSP QVQTTLVSFV KPLTCTDAVK NRYRFIVPKR EAAMGVLPQL QLNEHVPLYI  180
KDMHGKEWVI NYTWKEYTHM LSSGWIKFAN ANRLVTGDNV VFMRSMDSGE RYMGLRRTLK  240
PEPVSVDEVI EAVWRAARLE PFEVAYLSRQ DGDEFVVPCG IEDRLPNVGP QGKVIAIENY  300
ATSIWRMIQV EWPSCAGMNR YVNFWQIREV LGESSFEAST CIVRSQDYSP APQRNLVNAL  360
QLPDGTKQLQ QNKKSVSSSS TFRLFGKKMT PGVPPRRDTS GLSGQVSLFS HYLPHDEDDG  420
QVPTMRQRLE TLFPDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A3e-213834118363Auxin response factor 1
4ldx_B3e-213834118363Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLA0A0E0HXH10.0A0A0E0HXH1_ORYNI; Uncharacterized protein
STRINGONIVA07G04120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-26auxin response factor 16