PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G29160.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 505aa    MW: 53837.2 Da    PI: 8.616
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G29160.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.4e-41210286278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
  ONIVA06G29160.3 210 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 286
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-33202271IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496207284IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-38209289IPR004333Transcription factor, SBP-box
PfamPF031101.8E-31210283IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAIVFIQVEY NGDNDSLSAK GAAVEILNSA MASFGMNWNQ KSPVFWDWEN PAPFGPNTME  60
NPKSIPHPEP RGVVVAAANH GSTNSSGGTF TSSSELANGS SKSSLSASFD SSSKLGNSLE  120
FRFASVKGHG KNMCKDGEAG RVEDSGTSPA VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK  180
SSSAASGVTC PSTVVKKVKV SQQSTQSSYC QVEGCKVDLS SAREYHRKHK VCEAHSKAPK  240
VIVSGLERRF CQQCSRFHGL AEFDQKKKSC RRRLSDHNAR RRKPQQEAIS FGSSRLATMF  300
YDARQQTDIY FGQSPFGQVR SNAISSCDNL GGFKFTEAKL PWMKPMKTIG LEDLNFSTLQ  360
MPGNVVSHTV HHHDFDGLIP FKGNTTKVLN QGVDPACAVV SSNSNGAPDL RRALSLLSSD  420
SWGPADVQAG SQVHPGGVMP PLAVAAATVT APTNPVSVMH ALHPSTGGGG FWQDGDDPPP  480
LDHASQAQAF MHPGNGSSSG YGHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-282102831184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265282KKKSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731790.0AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence.
GenBankAK1021360.0AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643448.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643450.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643451.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643452.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643454.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643455.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643456.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643457.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643458.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643459.10.0squamosa promoter-binding-like protein 12
RefseqXP_015643461.10.0squamosa promoter-binding-like protein 12
RefseqXP_025882366.10.0squamosa promoter-binding-like protein 12
RefseqXP_025882367.10.0squamosa promoter-binding-like protein 12
SwissprotA2YGR50.0SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A0E0HV130.0A0A0E0HV13_ORYNI; Uncharacterized protein
STRINGOMERI06G25020.40.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-47squamosa promoter binding protein-like 2