PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G28660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 253aa    MW: 27292.6 Da    PI: 9.0276
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G28660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.9e-18114168256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k
  ONIVA06G28660.1 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTK 168
                      778899***********************************************98 PP
2HD-ZIP_I/II117.57.7e-38114202190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L++e  eLr +
  ONIVA06G28660.1 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELR-R 202
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-1889171IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1996171IPR009057Homeodomain-like
PROSITE profilePS5007117.038110170IPR001356Homeobox domain
SMARTSM003892.4E-13112174IPR001356Homeobox domain
PfamPF000463.4E-15114168IPR001356Homeobox domain
CDDcd000865.32E-13114171No hitNo description
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
SMARTSM003405.4E-16170216IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-9170202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEGEDLGSWL GLGIGGGGYA YGGDDCRRSP SSPSPVQMLF SQHVKEEITR GYDHGRDEEQ  60
ASGSKIMKGE RGARLRVMRS IRNSGGDGSR SPVLSLGDDG GDGGSGGGGG GGTRKKLQLT  120
KEQSTLLEDS FRVHNILSHA QKHELARQLK LKPRQVEVWF QNRRARTKLK QTEVDCEFLK  180
RCCESLTEEN KQLKHELMEL RRLASAAAGS QLYVQFPRAA AAAMVNVCPS CEKVTVMGGG  240
GGETGKSSSS YSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643687.11e-139homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F61e-139HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A0E0HUU70.0A0A0E0HUU7_ORYNI; Uncharacterized protein
STRINGONIVA06G28660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-47homeobox from Arabidopsis thaliana