PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G28540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 189aa    MW: 20046.4 Da    PI: 6.5253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G28540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-171665255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++ a+++l+g
  ONIVA06G28540.1 16 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEVAARAYDDAARSLRG 65
                     59*******.7*********83...36*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-101665IPR001471AP2/ERF domain
PROSITE profilePS5103221.4041673IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-201674IPR016177DNA-binding domain
CDDcd000181.29E-181672No hitNo description
SMARTSM003805.4E-341679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-291674IPR001471AP2/ERF domain
PRINTSPR003671.1E-71728IPR001471AP2/ERF domain
PRINTSPR003671.1E-73955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRKSKQPQPQ PSPEIRYRGV RKRPSGRYAA EIRDPAKKTP IWLGTFDSAE VAARAYDDAA  60
RSLRGPTART NFPLAAPSAP PPRPPPPAAA AAATSSHSST VESWSGGAPR AAASALARSA  120
APMEATQEED CHSYCGSSSS VLCEDGSDDA AASRTPLPFD LNMPPPEEEL DMAAVADQMG  180
IRYDTLLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1816731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039350.0AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04.
GenBankAP0054570.0AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641022.18e-95ethylene-responsive transcription factor 3
TrEMBLA0A0E0HUT31e-131A0A0E0HUT3_ORYNI; Uncharacterized protein
STRINGONIVA06G28540.11e-132(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.19e-20ethylene responsive element binding factor 4