PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G26100.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 2069aa    MW: 226934 Da    PI: 7.4645
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G26100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0519401961627
                       -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                       C+ f +tG+C+ G+rCk +H++
  ONIVA06G26100.1 1940 CPVFEATGECPQGSRCKLHHPK 1961
                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.03718301859IPR000571Zinc finger, CCCH-type
SMARTSM003560.918301858IPR000571Zinc finger, CCCH-type
SMARTSM003561418591883IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.85918631884IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.23518851911IPR000571Zinc finger, CCCH-type
SMARTSM003560.009418851910IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7619121939IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-519121938IPR000571Zinc finger, CCCH-type
SMARTSM003561.119391961IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.43719401962IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2069 aa     Download sequence    Send to blast
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARS RYEYGGGGGG GYESHSHHQY  60
HLPDHHHHHH HPPPRVQHHH HHHHQQLPAP TPPPPPPPPL PQHRLEPPPP HYGFPPRGHP  120
DAYSPPPYHD PSPHHHYHRH GGDDFLPADE IRRVGGGHHH HHHHPQLQQL LPWEEAEEER  180
RRYGGATQQL RLSPSGPRKR QRGAVHDADV ESTSSSGPPP RRQRQQPHPD YALDDSFVDR  240
NNAHPGYMVH EGFSIHSDSK VSRKIQMPTQ MALPGSPHGT SAGYARRAPQ KVAPSRVSVW  300
HRIEENPAMY EPSSPPPHMP KEVHVSPCKS NNVAPASKEL ASVISVDCRG KSADGNDGDS  360
NTGTKKNPVK KNEKVLASVL VKPPMEPKEK EVAAKKMLKK PDKVQKNAVH SNIRSLVSTP  420
CPGAGAKKVK KIVIKKIVRK INGKGNQNST PVVSEKRDGI DANACEKEEG EITTSSFEKD  480
VISAHDPIAV SDTAGFGNAV NDQKQKNTNF TNPSGRNAAS ANGSMEIPDP PNGSGSAHPG  540
KEEVLSPKNP VDNSNASLVV EPIEVLEKSG TEHPRKEHDM SSIGSGVNDA FADANNHTQK  600
EVGEMNVAVA INSVRVSDAR EVPRCDDSSM EESKVPKDVD ANNAVCMDGV ASNCDTTEVC  660
GNEDARRECG KKLIGINDEK AFLLNNSARS SSTSDTCMTA VEGAQKKEGI ILTGSSEKSI  720
GFLGDSVGTH RTTEFGASKD APNEGDDMPS HPSEKDFMSL NSCGGLNYTE VSEKEDIQEK  780
EDRVPMESIV ACTSSGNEDI QVNEGRKPME LSEANAFSGS GDSQGKECRI PMGSSETNTS  840
SVNHVNASNE KDFSLSEDTQ KKESHRPIES CENTTFEIMH HEEAPSTEEV ITGVSLGRKV  900
AEGPTRSNER CSGARGNSAT TLKFGLACAT EDNQMEDLLN NRTALNETDD PLDAEDSPVF  960
VPPSSRNVES TYASPLYDPM EDSTSDGILN IGLGRNTTSK AAELLDLHRD HISSENDSLI  1020
HSRGTSSVSG NREQSVPTAL TLGSNIYFSS AETDDRPEER HELVVEGQQG LTVETTSKLD  1080
SPGKIEVLNG AGFISTGIQN WLSLPPSINS MEMSGQFLNN GFTVSKGRLG LDQSMDDATS  1140
VSQDHDIAQD MDQRGSEDAF FSQDHSIRLC GSNLPHSHLL APKESSMNGE DQSGIVLTGL  1200
HPINSVNVLG HYGYQTDDIP VDNLNKLPSA LESSDAMDAD QVSSQVCVNP DHTNDSNTEN  1260
AGVESNAKQD LLSSWIEAIV SEAKKEHPPC KSTPLTVGLP DKLLEPKDSD RKTLLETVVP  1320
SAVKSPQINF ASSTLQKVAP KQVTLPSSSR EPTRANQNAR HRTWHRGNIA SSSSSLHASQ  1380
PLGLPPKLPP KKNDKAQNSY IRKGNALIRN PSNGNHPHSS TGHDTQNKLN KPVVRRSMNF  1440
VRKADTKDLA NSNISVERPK TPPLPLHTKS SCPTTLLEPL SQTLQKQHGH DAEKEDLTGQ  1500
PKSGVDNSSI KSAQKSEPSD PSKVVYVRPK SNQLVAAQRQ HPIDLVNSPT DKILSLQAPI  1560
ASDLYLKKRK NQIVLSSCSP SDGLSTKETL PAENSNSEEK KDLMIACSIS GIPGVKDRPQ  1620
KALQTTNNVG RFSHVWTLNG QQPQRKGFMG SSHMNAFPRI LPWKRKIFCK NFRSSHMSNV  1680
SSIRIVRKLL QTRKRDMIYT VSTDGFSLRK SGVLSVGGSS LKWSRSLEKR SQKVNKEATL  1740
ALAEVERRKR EKRKRQSLHD KGDHQFESVT GNQLRNSCQS SSDLRKPSTC NEYVRVSKGN  1800
QLVRNPKNVI RMLASDKVRW SLHTVRSRLA KKQQYCQFFT RFGECKKPRG KCPYIHDRAK  1860
VTICTKFLKG LCSNTSCKLT HKVLPERMPD CSYFLRGLCT NIACPYRHVK VNLNAPVCED  1920
FLKGYCAYGD ECHKKHSYVC PVFEATGECP QGSRCKLHHP KSKVKSKSRR PDFLQNSSWG  1980
RYFDASIDHQ DETRKVSLDE DEREKPQRVF SDGDLGFISL DDDADEDVTA LDASDDIPLM  2040
ELDSGDLSAQ TDNLDALIKP LRIMRTARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C1e-151836196141168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C1e-151836196141168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117461751RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035730.0AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643043.10.0uncharacterized protein LOC4341610 isoform X2
TrEMBLA0A0E0HTX70.0A0A0E0HTX7_ORYNI; Uncharacterized protein
STRINGONIVA06G26100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010