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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G25940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 986aa MW: 97301 Da PI: 6.0879 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.8e-10 | 121 | 172 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge ONIVA06G25940.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69********.8*********95....258************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-4 | 121 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-18 | 121 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-21 | 122 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-14 | 122 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.701 | 122 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-18 | 122 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 986 aa Download sequence Send to blast |
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVHVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPAPPLSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG AGAGVGGGCG VGRGGGGGRG 360 RGGKRAPTTA VTVVAPPPPV PTPAAGAAAP TLAPASAAAH APALSVEPDA LVSPASIAPA 420 YAAPAPAPAP AALEALAPPP PAAPASLSAS GGERGCVAIA NAAVAGRGRG RGSGAKRAPT 480 AVTVGAPPPQ ARTPAAAPAK AFVSAPAPAP SAVISPVLAA SASAAAAFAP APAPAAAEVI 540 PPPPPLPAAA STAAAPAAER KRKLLTASSL SSSGGERGRG RARGRGRVAD AAIAGGSRGR 600 GRGCGLTPAV VTVGAPPPPS AAPAPAPASA LSLEPNDIIA PVMSSTLAPG ASTAAAAAPA 660 VAPPVAAPEA ILIPMPPPAA AVAAAAPVPK KRKLLTASTL SGSGGPGRGR GRVAKATFAG 720 RGRGVWSGRG RGRGRIPTEV TVGTPSPSAP TPAPASATAP LIQSNVVISP VPPTLAASGV 780 AAWPPVPAIP ELTTAAAAPL PKKPVLTAHD VVMATLFPNG VFSYTAWSSH APPPPVASGS 840 FFQEVIPPGG VPTNYAIHEA PDFDPNVFFA DVPDGEQDEL VLLSLTSTLL DVDNSLTLVA 900 DDAASSPQAA VDVASSSAQA AIDVPSSSVL AVIDIPSSSA QAAIDVPASS AQAATDVASS 960 STQGAAGNER PIMFDFDLNE PASNFE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 576 | 585 | RGRGRARGRG |
2 | 576 | 586 | RGRGRARGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005386 | 0.0 | AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881953.1 | 0.0 | calphotin | ||||
TrEMBL | A0A0E0HTW0 | 0.0 | A0A0E0HTW0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G25940.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13787 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-12 | ERF domain protein 12 |