PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G25000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 280aa MW: 28880.8 Da PI: 9.6014 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1.1e-06 | 85 | 110 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck G++C+FaHg+ ONIVA06G25000.2 85 KTRMCNKYNTAEGCKWGSKCHFAHGE 110 89**********************96 PP | |||||||
2 | zf-CCCH | 36.7 | 7.1e-12 | 245 | 270 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ ONIVA06G25000.2 245 FKTKLCENFNK-GSCTFGDRCHFAHGE 270 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 100 | 19 | 44 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 29 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.629 | 32 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-14 | 80 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.97 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 83 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.727 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 1.5E-10 | 150 | 220 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.8E-15 | 151 | 219 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.802 | 151 | 215 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 2.48E-15 | 153 | 245 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.94E-13 | 153 | 215 | No hit | No description |
Pfam | PF00013 | 5.1E-11 | 153 | 216 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 242 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 244 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-9 | 244 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.131 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEAGGGKRAA PEGTNGAAKR AREIVVEGTS GCPFGSSCHF LHNFPGGYQA AAKMTSHGGT 60 AVAAPPGRMP LGPGAPNGPP TSSVKTRMCN KYNTAEGCKW GSKCHFAHGE RELGKPMLLD 120 NSMPHPMGSM PFEAPPMPGP DIVPPSTFGA SATAKISVDA SLAGGIIGKG GTNTKHISRM 180 TGAKLAIRDN ESNPNLKNIE LEGTFDQIKH ASAMVTELIV RISGNAPPAK NPGKGSHAGG 240 PGSNFKTKLC ENFNKGSCTF GDRCHFAHGE SELRKPPAAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003609 | 0.0 | AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641069.1 | 0.0 | zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q69XQ3 | 0.0 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0E0HTJ4 | 0.0 | A0A0E0HTJ4_ORYNI; Uncharacterized protein | ||||
STRING | OBART06G21060.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-49 | C3H family protein |