PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 397aa MW: 42817.5 Da PI: 7.6627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G24670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	226	245	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ ONIVA06G24670.1 226 FSCPVCYKTFNRYNNMQMHM 245 89*****************9 PP
2	zf-C2H2	14.1	0.00014	310	332	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ ONIVA06G24670.1 310 FMCRKCGKAFAVRGDWRTHEKNC 332 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	9.68E-5	25	34	No hit	No description
SuperFamily	SSF57667	8.09E-5	222	248	No hit	No description
SMART	SM00355	0.45	226	248	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.1E-6	226	245	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.743	226	253	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	228	248	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.39E-6	294	330	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	306	330	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	310	330	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	310	330	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGDPYTNFLR GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE 60 ALPLLSLTPS TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DGKRESPSAA 120 AAADDQAAEV TVALHIGLPS PSPSDAAAAA GNQAAAAAAA AEASAAGGGS SRMQVEEEGG 180 EEEDEDEAAA TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN 240 MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH 300 YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG 360 HAACGIDSFD DLDADDDPSS DLDHASASAS ASASRVG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGDPYTNFLR GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE  60
ALPLLSLTPS TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DGKRESPSAA  120
AAADDQAAEV TVALHIGLPS PSPSDAAAAA GNQAAAAAAA AEASAAGGGS SRMQVEEEGG  180
EEEDEDEAAA TATLPLGCAS IGIGKLTKGQ YWIPTPSQIL IGPTQFSCPV CYKTFNRYNN  240
MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAAGCR NNIDHPRARP LKDFRTLQTH  300
YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCAC GSDFKHKRSL KDHIRAFGRG  360
HAACGIDSFD DLDADDDPSS DLDHASASAS ASASRVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071104	0.0	AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642156.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0E0HTF4	0.0	A0A0E0HTF4_ORYNI; Uncharacterized protein
STRING	ONIVA06G24670.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]