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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA06G24230.4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MYB |
Protein Properties |
Length: 470aa MW: 51794.8 Da PI: 4.6297 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA06G24230.4 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59.1 | 9.6e-19 | 78 | 125 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l
ONIVA06G24230.4 78 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 125
79******************************************9986 PP
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2 | Myb_DNA-binding | 42.3 | 1.7e-13 | 131 | 174 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++
ONIVA06G24230.4 131 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 174
79********************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MEGSSPMEEE EEAARLAGSQ GESPAMLHPN GDGDGDGGDD EGDASGGEEE QGGVARAGVR 60 RRGGGGRVRV RGRIPLKKGP WTPDEDKRLR EYVEAHGEGN WNRVQRNAGL NRCGKSCRLR 120 WANHLKPDLK KGPFSKEEEE MIIKLHLWLG NKWAKMANSL PGRTDNEIKN FWNTRCKRIQ 180 RTGEPLYPKE FNHFKLTDLE VMNCESPDES RAKKRTNEVL QGNGQSYKEV FFDNLDYSRP 240 ENYIRPNCVT PNSLPVDATS PFGSAIATQD QSVPFGSAIV SGHPILDGNF STSGTIQRPM 300 NVELPSLQYP NYDFNNNNAW SYHDPLGHPI DQVDFGSLRS EYLSPNNNGL LDALVHGGHG 360 QGELANSQGS FDACFPRVQC NQVIQSNAFS LSSSFPIIGD DLLENIYCQF NEELPPSNEQ 420 FAKDADDAFG HGGLSDETNL AAAGQGDEHD LENPWASMPG ACDIPDFPSE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB212075 | 0.0 | AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds. |