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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G21640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 27152.4 Da PI: 4.5813 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.3e-18 | 50 | 96 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ ONIVA06G21640.1 50 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 96 69****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.3E-31 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-12 | 50 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.69E-18 | 51 | 107 | No hit | No description |
PRINTS | PR00367 | 3.7E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MPEYELAACS PASPSSSASS TSTPPSPGGE AAARCGEKRG RGGGGGRHPT YRGVRMRAWG 60 KWVSEIREPR KKSRIWLGTF PTPEMAARAH DAAALVVKGP AAVLNFPGAA ASLPRPASAA 120 PRDVQAAAAR AAAMALDAVV PAPPSPPPPL MPPQASPSEA ARAHALVAQV DQDDDEEELE 180 EIVELPPIDE LDAAAELVFA SSGATTFHYD PAADQPWYDQ PAACLQDGGG GGIAVHDALG 240 FELDHVWADG VVASGFGALL WNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 43 | 107 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003682 | 0.0 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642814.2 | 0.0 | dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0E0HSA9 | 0.0 | A0A0E0HSA9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G21640.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27173 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 7e-27 | ERF family protein |