PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G16870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 77aa MW: 8611.87 Da PI: 10.028 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.4 | 3.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rien++ rqvtfskRr g++KKA+EL +LCda+v v++fsstg+ly+ys+ ONIVA06G16870.1 9 SRIENTTSRQVTFSKRRSGLFKKAKELAILCDAQVGVLVFSSTGRLYDYSN 59 59***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.595 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-26 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.88E-33 | 3 | 64 | No hit | No description |
Pfam | PF00319 | 1.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007584 | Biological Process | response to nutrient | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MVRGKTVISR IENTTSRQVT FSKRRSGLFK KAKELAILCD AQVGVLVFSS TGRLYDYSNC 60 SNSRNLTYDQ LLGDTVC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-15 | 1 | 66 | 1 | 66 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005646 | 1e-94 | AP005646.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1077E08. | |||
GenBank | AP014962 | 1e-94 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-94 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641670.1 | 2e-35 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 1e-26 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
Swissprot | Q6VAM4 | 4e-27 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A0E0HQK3 | 2e-48 | A0A0E0HQK3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G16870.1 | 3e-49 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-28 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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