PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G12870.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 252aa    MW: 26141.3 Da    PI: 5.5502
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G12870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1581.5e-4929123195
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+  lGf+dyv pl++yl++ re e
  ONIVA06G12870.1  29 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMREYE 122
                      69******************************************************************************************99 PP

            NF-YB  95 g 95 
                      g
  ONIVA06G12870.1 123 G 123
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-4527123IPR009072Histone-fold
SuperFamilySSF471133.26E-3632128IPR009072Histone-fold
PfamPF008082.6E-243699IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.1E-136381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.1E-1382100No hitNo description
PRINTSPR006155.1E-13101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEPAFPNGGA AAPPPPIAAE QLPPAAAVVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK  60
EVIQECVSEF ISFVTGEAND RCHREHRKTV TAEDLVWAMD RLGFDDYVPP LTAYLRRMRE  120
YEGGGSGGGG GGGRGAAAAP AVVPPPPPPP PPPEDAFRYV QVHHPVYAAP GEPVQGYGYP  180
VAMSSALPAP HVHVGVRGGG QHEVFGGGPA PLAVYYGGAP YGEASSRGGC SAADEGSSSS  240
SASPAPVGPN YE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-5229120697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642670.11e-131nuclear transcription factor Y subunit B-10-like
TrEMBLA0A0E0HP471e-177A0A0E0HP47_ORYNI; Uncharacterized protein
TrEMBLA2YBT41e-177A2YBT4_ORYSI; Uncharacterized protein
STRINGONIVA06G12870.11e-178(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-52nuclear factor Y, subunit B6