PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G05610.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 697aa MW: 78240.9 Da PI: 9.309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G05610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	214	300	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la ONIVA06G05610.1 214 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLA 300 7******************9***************99988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-20	214	300	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MIRVNPQPST NVAGGLDFEI GRGARPIWAG FHWAECIEGP PVRRVHVRVS KTRCTQPRSG 60 APPDLPWTGS IVSAVDRRQP SPPHVAGLRR GRRSVVGKRR ASSVPRLPPP LTPSSSWLGP 120 DLRWGSAATA PRLAPPPPPA SPPRRYSGLR HLPLRALLRE MDSSRDSEEE RPQRKDNGEE 180 TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH RIGFSVRKGK QSYFIGTKNI 240 RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV DEKGRWTVIR FVPTHNHQLA 300 KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI GSDIVEPPGY TIRDCYNHVS 360 MQGITIIEAG DSQSLVNYFK RRTNEEGMFY WDVQVDQEGR MTNFFFRDAK SRNDFDCFGD 420 ACMQGPNSET ELEESWATML NEYKLQENSW LSDLYRSRNK WCSAFNKDTF DGGINSSQWG 480 EVSNNTFTGI SDESTPLTRF ALLLEKVFKG LRRNESEEDF RCSQTAPVRA IKHSTVLKQA 540 AESYTHKIYK LFEAEFLDGC GATSCHEREK ALDVFFEIRS LRSQAAKDVS KRDKKKKKSS 600 KGPSTKKAKP TPATSSAVPE LLAQTNVHQF QSAQDAQGNT TIGRPLYYQA FSSAPMQPNQ 660 IYMHPNMHTM PLCAPQQDFS AYSAMRPNSN FGGAKNV

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MIRVNPQPST NVAGGLDFEI GRGARPIWAG FHWAECIEGP PVRRVHVRVS KTRCTQPRSG  60
APPDLPWTGS IVSAVDRRQP SPPHVAGLRR GRRSVVGKRR ASSVPRLPPP LTPSSSWLGP  120
DLRWGSAATA PRLAPPPPPA SPPRRYSGLR HLPLRALLRE MDSSRDSEEE RPQRKDNGEE  180
TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH RIGFSVRKGK QSYFIGTKNI  240
RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV DEKGRWTVIR FVPTHNHQLA  300
KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI GSDIVEPPGY TIRDCYNHVS  360
MQGITIIEAG DSQSLVNYFK RRTNEEGMFY WDVQVDQEGR MTNFFFRDAK SRNDFDCFGD  420
ACMQGPNSET ELEESWATML NEYKLQENSW LSDLYRSRNK WCSAFNKDTF DGGINSSQWG  480
EVSNNTFTGI SDESTPLTRF ALLLEKVFKG LRRNESEEDF RCSQTAPVRA IKHSTVLKQA  540
AESYTHKIYK LFEAEFLDGC GATSCHEREK ALDVFFEIRS LRSQAAKDVS KRDKKKKKSS  600
KGPSTKKAKP TPATSSAVPE LLAQTNVHQF QSAQDAQGNT TIGRPLYYQA FSSAPMQPNQ  660
IYMHPNMHTM PLCAPQQDFS AYSAMRPNSN FGGAKNV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023482	0.0	AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBank	AP002536	0.0	AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643627.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015643629.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A0E0HLM6	0.0	A0A0E0HLM6_ORYNI; Uncharacterized protein
STRING	ONIVA06G05610.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-21	FAR1-related sequence 5