PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G01910.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 589aa    MW: 63029.7 Da    PI: 6.3877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G01910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.71.6e-11221456626374
             GRAS  26 rlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                       l+ +asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++     ++ ++al++++ ++Pi++f h+t N+ +l+++eg+ervH+i
  ONIVA06G01910.1 214 ALELMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPIPRFLHFTLNERLLREFEGHERVHVI 307
                      57889*****************************************9989999***************************************** PP

             GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
                      Dfdi+qGlQWp Llq+La+R+ +p+++RiTg+g+    s++el+etg rLa++A++lg+ fef++ v++rled++l++L+vk+gE++aVn+vl+
  ONIVA06G01910.1 308 DFDIKQGLQWPGLLQSLAARAVPPAHVRITGIGE----SRQELQETGARLARVAAALGLAFEFHA-VVDRLEDVRLWMLHVKRGECVAVNCVLA 396
                      **********************************....9**************************.7*************************** PP

             GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvace 301
                      +hrll+++++l++    +L l +s+ ++++ + e+e    ns+++ +rf++al+yy+a fd++ +a+lp++s +r+k E++ ++rei+n+va e
  ONIVA06G01910.1 397 MHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdAAGLPEASPARAKAEEM-FAREIRNAVAFE 485
                      *********9999....*******************8777***********************9999**************.************ PP

             GRAS 302 gaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      g er+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +        ++l+l W d+pL++v+aW+
  ONIVA06G01910.1 486 GPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHggggsgdGEALTLRWLDQPLYTVTAWT 566
                      *******************9679**********************888****77666666466677**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.728161539IPR005202Transcription factor GRAS
PfamPF035145.6E-110214566IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR SSRGDGAAPR VAGDARSGAT TCSFRTHPAP  60
PVTQSVSWGA KPEPGGNGNG AHRAVKRAHD EDAVEEYGPI VRAKRTRMGG DGDEVWFHQS  120
IAGTMQATAA GEGEEAEEEK VFLVPSAAAF PHGMAAAGPS LAAAKKEEYS KSPSDSSSSS  180
GTDGGSSAMM PPPQPPEFDA RNGVPAPGQA EREALELMAS PAGPTPMHRV AAYFTEALAL  240
RVVRMWPHMF DIGPPRELTD DAFGGGDDDA MALRILNAIT PIPRFLHFTL NERLLREFEG  300
HERVHVIDFD IKQGLQWPGL LQSLAARAVP PAHVRITGIG ESRQELQETG ARLARVAAAL  360
GLAFEFHAVV DRLEDVRLWM LHVKRGECVA VNCVLAMHRL LRDDAALTDF LGLARSTGAT  420
ILLLGEHEGG GLNSGRWEAR FARALRYYAA AFDAVDAAGL PEASPARAKA EEMFAREIRN  480
AVAFEGPERF ERHESFAGWR RRMEDGGGFK NAGIGEREAM QGRMIARMFG PDKYTVQAHG  540
GGGSGDGEAL TLRWLDQPLY TVTAWTPAGD GAGGSTVSAS TTASHSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5320956737380Protein SCARECROW
5b3h_A3e-5320956736379Protein SCARECROW
5b3h_D3e-5320956736379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881992.10.0protein DWARF AND LOW-TILLERING-like
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A0E0HK920.0A0A0E0HK92_ORYNI; Uncharacterized protein
STRINGONIVA06G01910.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-105GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]