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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ONIVA05G29400.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MYB |
Protein Properties |
Length: 410aa MW: 43820.5 Da PI: 6.8241 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA05G29400.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.6 | 3.8e-15 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl
ONIVA05G29400.1 36 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 83
678*******************************************97 PP
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2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
ONIVA05G29400.1 89 RGAFSPQEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 132
89********************.*********.***********97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0050832 | Biological Process | defense response to fungus |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MRKPDCGGGG GAAKGGGVLG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS 60 DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VNLHAILGNR WSQIAARLPG 120 RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGG GGATDDVVVG 180 TANAAMKSMW VDSSSSSSSS SSSMQSRPSI MAAAAAGRSY GGLLPLPDQV CGVDTSPPPP 240 FFHDHSISIK QAYYGSTGAH HHHHAIAAMD GSSLIGDHHH HSSSILFGGA SVPPLLDHQT 300 ILDDDDDHPN KTGSNTTAAT LSSNITDNSN SNKNNSDNNN NISSSCCISL MNSSSNMIYW 360 EGHHQQQQQQ QHQMLQQQQQ HMSRNVMGEW DLEELMKDVS SLPFLDFQVE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN634084 | 0.0 | JN634084.1 Oryza sativa Japonica Group secondary wall MYB46 transcription factor mRNA, complete cds. |