PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G27760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 148aa MW: 16693.9 Da PI: 4.8167 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4e-10 | 14 | 38 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f+++ G C++GdrC++ H ONIVA05G27760.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38 6899********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.065 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0068 | 13 | 39 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 14 | 38 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 3.5E-43 | 18 | 37 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 3.5E-43 | 37 | 57 | IPR009145 | U2 auxiliary factor small subunit |
Gene3D | G3DSA:3.30.70.330 | 1.6E-20 | 44 | 132 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.5E-43 | 75 | 90 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 5.57E-12 | 77 | 132 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 3.5E-43 | 103 | 125 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TVSPTIVLAN MYQRPDMITP 60 GVDAQGQPID PEKMQEHFED FYEDIYEELS KFGEVETLNV CDNLADHMIG NVYVQFREEE 120 QAVAAHNALQ GSLRRTAATV GATVILCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 3e-44 | 1 | 125 | 1 | 120 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124143 | 0.0 | AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence. | |||
GenBank | AK070198 | 0.0 | AK070198.1 Oryza sativa Japonica Group cDNA clone:J023041B11, full insert sequence. | |||
GenBank | AK104767 | 0.0 | AK104767.1 Oryza sativa Japonica Group cDNA clone:001-039-A01, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | Y18348 | 0.0 | Y18348.1 Oryza sativa mRNA for U2 snRNP auxiliary factor, small subunit 35b. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639721.1 | 3e-95 | splicing factor U2af small subunit B | ||||
Refseq | XP_015639722.1 | 3e-95 | splicing factor U2af small subunit B | ||||
Swissprot | Q6AUG0 | 2e-96 | U2AFB_ORYSJ; Splicing factor U2af small subunit B | ||||
TrEMBL | A0A0E0HIG9 | 1e-108 | A0A0E0HIG9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G27760.1 | 1e-109 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1261 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 4e-30 | C3H family protein |
Publications ? help Back to Top | |||
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