|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ONIVA05G26860.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
Trihelix |
Protein Properties |
Length: 346aa MW: 37432.3 Da PI: 10.5591 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA05G26860.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 42.9 | 1.3e-13 | 40 | 126 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ e+ aL++a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ st+++f +l+
ONIVA05G26860.1 40 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 126
7******************************************99999999********************999886......5899999998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL 60 NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV DTLKKKYKAE RARVMPSTWS 120 FFPELDRLVG PTLSASASKR PSPSPSPVPP PPHFAMPIHP SAVRKPPSPS PSPSPPPPMA 180 LPLPSYRRGS PLPAAALIQQ EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSLSSRSG 240 NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN 300 FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G58630.1 | 1e-30 | sequence-specific DNA binding transcription factors |