PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21870.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 430aa    MW: 47559 Da    PI: 9.8117
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21870.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.91.1e-28212272155
          G2-like   1 kprlrWtpeLHerFveaveqLGGse......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt++LH+rFv+a++qLGG++      +AtPk +l +m+v+g+t++hvkSHLQkYRl
  ONIVA05G21870.2 212 KQRLRWTSDLHNRFVDAIAQLGGPDsgyslsRATPKGVLTVMGVPGITIYHVKSHLQKYRL 272
                      79*********************975555558****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-28210273IPR009057Homeodomain-like
SuperFamilySSF466892.15E-14211272IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-21212273IPR006447Myb domain, plants
PfamPF002492.1E-6214271IPR001005SANT/Myb domain
PfamPF143794.9E-24304350IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKK SPQIPRPPSP  60
LSLALPSPRV AFAGHHRPSP LSPPLLSSRR LLPSLFDPPN SQLGIPPRTA AEAEAAEESI  120
WFPCAARFLV VVAAAGGGSL PRRAGKQGIE APVEKLYYST IQLCYILMMY HAKKFSVPFG  180
PQSTQSNEHM SNIGAFGGSN MGSPANPAGS GKQRLRWTSD LHNRFVDAIA QLGGPDSGYS  240
LSRATPKGVL TVMGVPGITI YHVKSHLQKY RLAKYIPESP AEGSKDEKKD SSDSLSNTDS  300
APGMQINEAL KMQMEVQKRL HEQLEVQRQL QLRIEAQGKY LQMIIEEQQK LGGSLKACEE  360
QKLPHSPPSL DDYPDSMQPS PKKPKMDNLS PDSVRDVTQS DFESHLIGPW DQEAAFRVDE  420
FKADPGLNKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-19211275159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
GenBankCT8300690.0CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.10.0myb family transcription factor PHL7
RefseqXP_015639153.10.0myb family transcription factor PHL7
RefseqXP_015639154.10.0myb family transcription factor PHL7
RefseqXP_015639155.10.0myb family transcription factor PHL7
TrEMBLA0A0E0HG830.0A0A0E0HG83_ORYNI; Uncharacterized protein
STRINGONIVA05G21870.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-51G2-like family protein