PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21490.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 494aa    MW: 51695.4 Da    PI: 6.1964
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.61.6e-841174852374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf++A+aarl++s+ ++++ ++p ++         aa++++++v P+ +++
  ONIVA05G21490.1 117 IALLMECAAAMSVGNLAGANGALLELSQMASPYAaSCGERLVAYFARAMAARLVGSWVGVVAPMAPPPSC----GAINAAFRALYNVAPFARLA 206
                      689******************************96778***********************999888885....6777899************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +l++NqaIle ++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp +R+Tg+g     s+  l+ tg++La +A++l ++fef +++ +  
  ONIVA05G21490.1 207 YLACNQAILETFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYAVAKRPG 296
                      *************************988447**************************....9**************************877777 PP

             GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleakl 275
                      ++  + ++  ++ gEa+aV++    h ++d  ++        ++lv+ l+P  v++veqe  h+++    +Fl+rf++al++ysa+fd++ a+ 
  ONIVA05G21490.1 297 DADAVADMPGRRpGEAVAVHWLR--HAMYDAAGDDGA----SMRLVRWLEPAAVTLVEQERAHGGGgghgRFLDRFVSALHHYSAVFDAMGASR 384
                      7778888855555********98..777755555555....99*****************99955445669*******************9998 PP

             GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrp 366
                      p  +   r+  E+ +lgrei nv+a  g +r   +e  ++Wre l + GF  +  +      a+l+ + ++ + gy+v  + +g++ lgWk+ p
  ONIVA05G21490.1 385 PDGEdASRHLAEHGVLGREIANVLAVGGPARSSGREGPGSWREVLARHGFAHAGGGGG-GGRAQLVAAACPgGLGYTVAGDhDGTVRLGWKGTP 477
                      8877689999*****************************************9997765.567999999999999*****66166666******* PP

             GRAS 367 LvsvSaWr 374
                      L++vSaW+
  ONIVA05G21490.1 478 LYAVSAWT 485
                      *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.26990464IPR005202Transcription factor GRAS
PfamPF035145.5E-82117485IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MQDSLGLMQF HDHHQYLYSS SSSNLPLQQP LLSHHHRFLE ANEGCAGEDD SPEFVEPPAA  60
AAAAGTFEQR PELGACKEVY SEEGGAAEER TGVAMAGADV EQVAVEDEEE AHGVRMIALL  120
MECAAAMSVG NLAGANGALL ELSQMASPYA ASCGERLVAY FARAMAARLV GSWVGVVAPM  180
APPPSCGAIN AAFRALYNVA PFARLAYLAC NQAILETFHG KRLVHIVDLD VVPGGALQWL  240
SLLPALAARP GGPPVIRVTG FGMSASVLHD TGNQLAGLAR KLCMSFEFYA VAKRPGDADA  300
VADMPGRRPG EAVAVHWLRH AMYDAAGDDG ASMRLVRWLE PAAVTLVEQE RAHGGGGGHG  360
RFLDRFVSAL HHYSAVFDAM GASRPDGEDA SRHLAEHGVL GREIANVLAV GGPARSSGRE  420
GPGSWREVLA RHGFAHAGGG GGGGRAQLVA AACPGGLGYT VAGDHDGTVR LGWKGTPLYA  480
VSAWTWCSPP HARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-891014854378Protein SCARECROW
5b3h_D2e-891014854378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939520.0AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence.
GenBankAC1182890.0AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638651.10.0protein SCARECROW
TrEMBLA0A0E0HG210.0A0A0E0HG21_ORYNI; Uncharacterized protein
STRINGONIVA05G21490.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-65GRAS family protein