PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G19500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 395aa MW: 41055.4 Da PI: 6.5107 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7e-17 | 163 | 210 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + ng +r++lg+f t+e+Aa a+++a+++ +g ONIVA05G19500.1 163 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 210 9*****.**********44465..***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.705 | 160 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-7 | 161 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 162 | 219 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.9E-29 | 163 | 224 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-20 | 163 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-26 | 163 | 219 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-12 | 163 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-7 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MEPNYSDYHP NSVPFDAYYE HGHGHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT 60 SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDD DAADISALME AASISCWTTN 120 GGAGASTSQT TGLEGVEVMR RAAAPAPDNG SSDKEEAARP LIGVRKRPWG KYAAEIRDST 180 RNGARVWLGT FNTPEQAALA YDQAALSVRG PGAVLNYPLH RVRESLRTLE LGAAAAASES 240 PVLTLKRRHR IRKRSTTKKA LAGKEADEAP ATTSSEGKKK RQVNTTSHSH DGAWRRHLLS 300 SGRLSTEGLT AAGGRGGLAG GRGEAAGSNV CAADNDEDGE AAAGSSVHVA NDDDDGSEAA 360 AVSSVHAADN DDEAVAGSGV RVTTTTAARR RSGAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 163 | 220 | 8 | 65 | ATERF1 |
3gcc_A | 3e-22 | 163 | 220 | 8 | 65 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130602 | 0.0 | AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638626.1 | 0.0 | ethylene-responsive transcription factor ERF094 | ||||
TrEMBL | A0A0E0HFB9 | 0.0 | A0A0E0HFB9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G19500.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-35 | ethylene response factor 1 |