PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G19180.5

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 537aa MW: 59653.2 Da PI: 6.8346

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G19180.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.8	8.5e-12	222	269	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkke 48 k err+++NReAAr+sR+RKka++++Le+ + +++e+e ++ +++ ONIVA05G19180.5 222 AKTERRLAQNREAARKSRLRKKAYVQQLETsriRLQQIEQELQRARSQ 269 699*************************97222444555444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	219	286	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	221	265	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-9	222	275	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-8	223	269	No hit	No description
SuperFamily	SSF57959	3.63E-7	223	269	No hit	No description
PROSITE pattern	PS00036	0	226	241	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.3E-29	309	383	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MKLQGGFDLP VWEKTNRKRS NILSCGEGSS WRMANDHDRA VPHSQAVAYG IQGHAVLAAP 60 PANFLELQPA AAAYFGELEK ALIHGTSAGA GVDHGMIQSD AYTESAGYLA ARPPTLEIFP 120 SWPMSHLQEP YSNSQSVGST TDSSSAQNTM SQAELVSPAS MRSDSGQEQQ QQEVLMVTID 180 DYNYKQGLGA AIATAPSFQQ HAGGLDMRKH GSTRKDGKLL DAKTERRLAQ NREAARKSRL 240 RKKAYVQQLE TSRIRLQQIE QELQRARSQV PTLRKPHKIA TSNNTILTKG AVMFDMEYTR 300 WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF HLRAVLASSD VFHLMTGMWA 360 APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL QQSSEQTEEA LAQGLHQLHQ 420 SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ ADNLRQETLH HMRRILTTRQ 480 TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG TEFQVIQQSQ QNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MKLQGGFDLP VWEKTNRKRS NILSCGEGSS WRMANDHDRA VPHSQAVAYG IQGHAVLAAP  60
PANFLELQPA AAAYFGELEK ALIHGTSAGA GVDHGMIQSD AYTESAGYLA ARPPTLEIFP  120
SWPMSHLQEP YSNSQSVGST TDSSSAQNTM SQAELVSPAS MRSDSGQEQQ QQEVLMVTID  180
DYNYKQGLGA AIATAPSFQQ HAGGLDMRKH GSTRKDGKLL DAKTERRLAQ NREAARKSRL  240
RKKAYVQQLE TSRIRLQQIE QELQRARSQV PTLRKPHKIA TSNNTILTKG AVMFDMEYTR  300
WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF HLRAVLASSD VFHLMTGMWA  360
APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL QQSSEQTEEA LAQGLHQLHQ  420
SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ ADNLRQETLH HMRRILTTRQ  480
TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG TEFQVIQQSQ QNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639066.1	0.0	transcription factor TGAL5 isoform X10
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0E0HF75	0.0	A0A0E0HF75_ORYNI; Uncharacterized protein
STRING	ONIVA05G19180.5	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-127	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]