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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G18720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 37131.2 Da PI: 4.9708 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.3e-20 | 164 | 213 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g ONIVA05G18720.1 164 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 213 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-33 | 164 | 222 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 164 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 164 | 222 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.686 | 164 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 164 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 165 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.83E-14 | 172 | 223 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 187 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MADQRRRFRG GGDWQASVDD VVDDGGELEA AAAAAAARGS VLSGEYQAQE MSTMVSALTW 60 VVAAGHDDHG GGQWSGLVDV PATTLAGGGG GDYGHGAQGS YYYYGAAPTS TPEFVAGGQQ 120 EQLSSDVPQG GASLGLAMDE HSPTYTVEAS SSADQHGGGG GGRRYRGVRQ RPWGKWAAEI 180 RDPHKAARVW LGTFETAEAA ARAYDEAALR FRGSRAKLNF PEDARLSSPP AGAGAGGATA 240 AAQPVPVAYP ASAVSDYLQY QMLLHGGGGG GGGRYPLYYG GGAAAAMSSS LGPYSSIPTS 300 SVTVASVPSS SSAASSSSGY GAPAEHGEAV QWTSWPDGGG WTYPATTSSW SGSSQYPPPP 360 RPPQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-24 | 162 | 221 | 3 | 63 | ATERF1 |
3gcc_A | 9e-24 | 162 | 221 | 3 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC105318 | 0.0 | AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638449.2 | 1e-173 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0E0HF09 | 0.0 | A0A0E0HF09_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G18720.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17429 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-16 | ethylene response factor 110 |