PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G15440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 628aa    MW: 67664 Da    PI: 4.6225
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G15440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.22.5e-2988172187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s  +++f+qlea
  ONIVA05G15440.1  88 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 172
                      8*********************************************************************866665..*******85 PP

2trihelix1086.4e-34395480187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+ev+aLi++r e+ee++++   k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  ONIVA05G15440.1 395 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 480
                      8********************************************************************97.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2285147IPR001005SANT/Myb domain
CDDcd122031.67E-2787152No hitNo description
PfamPF138375.7E-2187173No hitNo description
PROSITE profilePS500907.08587145IPR017877Myb-like domain
SMARTSM007171.0E-5392454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-5394451IPR009057Homeodomain-like
PROSITE profilePS500907.851394452IPR017877Myb-like domain
CDDcd122034.20E-27394459No hitNo description
SuperFamilySSF466898.54E-5394462IPR009057Homeodomain-like
PfamPF138372.5E-22395481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MQHPQGAGDP PYGVVPAPPT MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV  60
NSNDDDMMMV DDVVVAGGVG GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE  120
LSRRLAELGY QRSGKKCKEK FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP  180
PPQQRQGMPV EDPQPLAMAR MMLPGAADLG FLSMSSESES DDESDEEEEE EEAVAPGGGG  240
REGLGDDGDG DGEGGSSTRK LMAMFEGMMR QVTEKQDAMQ RVFLETLEKW EAERTEREEA  300
WRRKEVARIN REREQLSKER AAAASRDAAL IAFLQRVGGA GGEPVRLSPS SAGATRHDAA  360
AAGLQLVPVP APRAKAEDAW AAAGGDGSGT TAPSRWPKEE VQALIDLRME KEEQYNDMGP  420
KGPLWEEIAA GMQRIGYNRS AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA  480
IYRKKHFAGR GGGGGGVTIA ASHSSLAIVT VSEQDNPSQR ELEGKSSNDV GNVQLAVPLL  540
VHNAPDKKVE GSEGEPNVTA AAEETDSDEM GGEYTDDGDD DDKMQYKIEF QKPTAGGGGD  600
GNDAPVPATT AAATSSAPTS NTSFLAVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117420.0AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878530.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0E0HDU70.0A0A0E0HDU7_ORYNI; Uncharacterized protein
STRINGONIVA05G15440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-46Trihelix family protein