PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G15440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 628aa MW: 67664 Da PI: 4.6225 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.2 | 2.5e-29 | 88 | 172 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea ONIVA05G15440.1 88 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 172 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 108 | 6.4e-34 | 395 | 480 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a ONIVA05G15440.1 395 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 480 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.22 | 85 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.67E-27 | 87 | 152 | No hit | No description |
Pfam | PF13837 | 5.7E-21 | 87 | 173 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 87 | 145 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-5 | 392 | 454 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 394 | 451 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.851 | 394 | 452 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.20E-27 | 394 | 459 | No hit | No description |
SuperFamily | SSF46689 | 8.54E-5 | 394 | 462 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.5E-22 | 395 | 481 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MQHPQGAGDP PYGVVPAPPT MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV 60 NSNDDDMMMV DDVVVAGGVG GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE 120 LSRRLAELGY QRSGKKCKEK FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP 180 PPQQRQGMPV EDPQPLAMAR MMLPGAADLG FLSMSSESES DDESDEEEEE EEAVAPGGGG 240 REGLGDDGDG DGEGGSSTRK LMAMFEGMMR QVTEKQDAMQ RVFLETLEKW EAERTEREEA 300 WRRKEVARIN REREQLSKER AAAASRDAAL IAFLQRVGGA GGEPVRLSPS SAGATRHDAA 360 AAGLQLVPVP APRAKAEDAW AAAGGDGSGT TAPSRWPKEE VQALIDLRME KEEQYNDMGP 420 KGPLWEEIAA GMQRIGYNRS AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA 480 IYRKKHFAGR GGGGGGVTIA ASHSSLAIVT VSEQDNPSQR ELEGKSSNDV GNVQLAVPLL 540 VHNAPDKKVE GSEGEPNVTA AAEETDSDEM GGEYTDDGDD DDKMQYKIEF QKPTAGGGGD 600 GNDAPVPATT AAATSSAPTS NTSFLAVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878530.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0E0HDU7 | 0.0 | A0A0E0HDU7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G15440.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-46 | Trihelix family protein |