|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ONIVA05G02580.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
MYB |
Protein Properties |
Length: 427aa MW: 47151.6 Da PI: 6.567 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA05G02580.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl
ONIVA05G02580.1 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
|
2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
ONIVA05G02580.1 67 RGAFSQEEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
89********************.*********.*********9986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001944 | Biological Process | vasculature development |
GO:0009733 | Biological Process | response to auxin |
GO:0010089 | Biological Process | xylem development |
GO:0010119 | Biological Process | regulation of stomatal movement |
GO:0010214 | Biological Process | seed coat development |
GO:0048364 | Biological Process | root development |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPLT EADRRGAAPT VSTERTSGSS DVNPSSAGAL GNLSHLLSET AQSSMLLPVY 180 DKNHPETASL PRPKVPPKEL FLDQLTAGHE SPSSCRSSGP TLYFPFQQPL GYSNECGTGD 240 GASMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNLP PENPRHGGTG IGNTPFYWDG 300 SNPSSSGSTG SSGSNSMGFE PQSTTSILEN SVFPWTDIGQ EKDTRVHLVE ELKWPDLLHG 360 TFAEATTAMQ NQSQSLYDDV IKAESQFNME GICASWFQNQ QPQQQLQAAS DMYDKDLQRL 420 PLSFEHI
|